chr1 : 246,147,651 246,148,408
757 bp 64 TFs 0 linked genes
This 757 bp open chromatin element has no linked target genes and is bound by 64 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:246,142,651 – 246,153,408
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
64 transcription factors
Source
Cell type
AGO1 2 datasets
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 204 bp overlap
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 204 bp overlap
AR 1 dataset
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 141 bp overlap
ARNTL 1 dataset
ChIP NSC_hNP1 GSE134972.ARNTL.NSC_hNP1 284 bp overlap
BCL11A 1 dataset
ChIP MCF-10A ERP003925.BCL11A.MCF-10A 194 bp overlap
BRD4 9 datasets
ChIP BE2C GSE80151.BRD4.BE2C 113 bp overlap
ChIP BE2C GSE80151.BRD4.BE2C 348 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 148 bp overlap
ChIP LNCaP-clone-FGC_DHT-Enzalutamide GSE118247.BRD4.LNCaP-clone-FGC_DHT-Enzalutamide 297 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 459 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 367 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 113 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 348 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 563 bp overlap
CBX1 2 datasets
ChIP K562 ENCFF008KGK 409 bp overlap
ChIP K562 ENCFF008KGK 140 bp overlap
CBX3 2 datasets
ChIP K562 ENCFF410AQU 385 bp overlap
ChIP K562 ENCFF410AQU 136 bp overlap
CTCF 18 datasets
ChIP A-549 ENCSR000DNA.CTCF.A-549 116 bp overlap
ChIP A549 ENCFF182TCQ 213 bp overlap
ChIP BE2C ENCFF757SRF 111 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 256 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 98 bp overlap
ChIP HepG2 ENCFF348BUL 197 bp overlap
ChIP HepG2 ENCFF757EKU 314 bp overlap
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 229 bp overlap
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 313 bp overlap
ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 283 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 118 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 112 bp overlap
ChIP WA01_MESEN_STEM GSE52457.CTCF.WA01_MESEN_STEM 145 bp overlap
ChIP chondrocyte ENCFF134ORZ 418 bp overlap
ChIP endodermal cell ENCFF471YCZ 133 bp overlap
ChIP hepatocyte ENCFF263BLJ 277 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 188 bp overlap
ChIP BLaER1 ENCFF364PUR 82 bp overlap
E2F1 1 dataset
ChIP LNCaP_shRB GSE94958.E2F1.LNCaP_shRB 116 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 442 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 208 bp overlap
EP300 1 dataset
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 216 bp overlap
ERG 2 datasets
ChIP MCF-7 GSE23730.ERG.MCF-7 247 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 99 bp overlap
ESR1 21 datasets
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 241 bp overlap
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 188 bp overlap
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 109 bp overlap
ChIP Ishikawa_C2-14 GSE147141.ESR1.Ishikawa_C2-14 313 bp overlap
ChIP Ishikawa_C2-3 GSE147141.ESR1.Ishikawa_C2-3 436 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 405 bp overlap
ChIP Ishikawa_Dex_E2 GSE109891.ESR1.Ishikawa_Dex_E2 149 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 397 bp overlap
ChIP Ishikawa_E2 GSE109891.ESR1.Ishikawa_E2 93 bp overlap
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 351 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 369 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 489 bp overlap
ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 368 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 285 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 373 bp overlap
ChIP Ishikawa_ETV4-KO2_Rescue GSE129803.ESR1.Ishikawa_ETV4-KO2_Rescue 367 bp overlap
ChIP Ishikawa_M2-3 GSE147141.ESR1.Ishikawa_M2-3 294 bp overlap
ChIP Ishikawa_M2-5 GSE147141.ESR1.Ishikawa_M2-5 360 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 399 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 405 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 441 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 601 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 308 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 538 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 510 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 170 bp overlap
HAND2 2 datasets
ChIP Kelly GSE94822.HAND2.Kelly 143 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 424 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 196 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 470 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 473 bp overlap
MAX 4 datasets
ChIP H1 ENCFF914VQY 348 bp overlap
ChIP K562 ENCFF524IJO 380 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 262 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 371 bp overlap
MECOM 1 dataset
ChIP SKH1_CEBPA-ER GSE102697.MECOM.SKH1_CEBPA-ER 63 bp overlap
MYC 2 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 155 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 266 bp overlap
MYCN 7 datasets
ChIP BE2C GSE80151.MYCN.BE2C 198 bp overlap
ChIP BE2C GSE80151.MYCN.BE2C 295 bp overlap
ChIP NGP GSE80151.MYCN.NGP 238 bp overlap
ChIP NGP GSE80151.MYCN.NGP 244 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 198 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 295 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 116 bp overlap
NFIC 1 dataset
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 141 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BJR.NR3C1.A-549 104 bp overlap
OGG1 1 dataset
ChIP HEK293 GSE89017.OGG1.HEK293 488 bp overlap
PAX5 2 datasets
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 130 bp overlap
ChIP GM12892 ENCSR000BJI.PAX5.GM12892 139 bp overlap
PGR 1 dataset
ChIP myometrium_TP1 GSE137550.PGR.myometrium_TP1 190 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 236 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 485 bp overlap
RAD21 4 datasets
ChIP H1 ENCFF698EWO 97 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HepG2 ENCFF360ZSW 204 bp overlap
ChIP IMR-5 GSE78957.RAD21.IMR-5 107 bp overlap
RAD51 1 dataset
ChIP U2OS_CX-5461 GSE90967.RAD51.U2OS_CX-5461 270 bp overlap
RBM22 2 datasets
ChIP K-562 GSE120104.RBM22.K-562 492 bp overlap
ChIP K-562 ENCSR848AOP.RBM22.K-562 259 bp overlap
RORC 1 dataset
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 208 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 103 bp overlap
SETDB1 3 datasets
ChIP K-562 ENCSR000EWI.SETDB1.K-562 263 bp overlap
ChIP K562 ENCFF745PAW 383 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 172 bp overlap
SMARCA4 4 datasets
ChIP NGP GSE134626.SMARCA4.NGP 151 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 90 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 181 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 327 bp overlap
SMC1A 1 dataset
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 135 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 515 bp overlap
STAG1 3 datasets
ChIP Hep-G2 ERP000209.STAG1.Hep-G2 167 bp overlap
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 148 bp overlap
ChIP HepG2 ENCFF843EBZ 286 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 340 bp overlap
TCF12 2 datasets
ChIP Ishikawa ENCFF467DDW 443 bp overlap
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 333 bp overlap
TEAD4 1 dataset
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 111 bp overlap
TP53 2 datasets
ChIP Calu-1_MUT8-COMB GSE128673.TP53.Calu-1_MUT8-COMB 270 bp overlap
ChIP Calu-1_MUT8-DMSO GSE128673.TP53.Calu-1_MUT8-DMSO 365 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 132 bp overlap
TRIM24 4 datasets
ChIP K-562 ENCSR907MZR.TRIM24.K-562 260 bp overlap
ChIP K562 ENCFF616RIL 273 bp overlap
ChIP MOLM-13_IACS-9571 GSE100571.TRIM24.MOLM-13_IACS-9571 260 bp overlap
ChIP MOLM-13_dTRIM24 GSE100571.TRIM24.MOLM-13_dTRIM24 246 bp overlap
TRIM28 5 datasets
ChIP AF22 GSE84259.TRIM28.AF22 296 bp overlap
ChIP K-562 ENCSR474CVP.TRIM28.K-562 201 bp overlap
ChIP K562 ENCFF429WPG 262 bp overlap
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 251 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 197 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 504 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 504 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 121 bp overlap
USF2 1 dataset
ChIP K-562 GSE111469.USF2.K-562 229 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 384 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 495 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_DHT GSE123089.ZBTB7A.VCaP_DHT 138 bp overlap
ZNF316 2 datasets
ChIP K-562 ENCSR200JYP.ZNF316.K-562 215 bp overlap
ChIP K562 ENCFF281INV 204 bp overlap
ZNF519 1 dataset
ChIP HEK293T GSE78099.ZNF519.HEK293T 77 bp overlap
ZNF680 3 datasets
ChIP HEK293 ENCFF418WHE 99 bp overlap
ChIP HEK293 ENCSR307CKC.ZNF680.HEK293 133 bp overlap
ChIP HEK293 GSE76494.ZNF680.HEK293 76 bp overlap