chr16 : 19,853,872 19,854,881
1,009 bp 59 TFs 5 linked genes
This 1.0 kb open chromatin element is linked to 5 target genes and is bound by 59 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
GPRC5B 30.4 kb Distal Multiome
IQCK 136.1 kb Distal Multiome
KNOP1 136.3 kb Distal Multiome
GPR139 219.4 kb Distal Multiome
VPS35L 298.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr16:19,848,872 – 19,859,881
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
59 transcription factors
Source
Cell type
AR 3 datasets
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 117 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 206 bp overlap
ChIP prostate-cancer_PDX_81 GSE130408.AR.prostate-cancer_PDX_81 80 bp overlap
ARID1A 2 datasets
ChIP RMG-I GSE104545.ARID1A.RMG-I 367 bp overlap
ChIP RMG-I GSE120058.ARID1A.RMG-I 311 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 210 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 272 bp overlap
BHLHE40 4 datasets
ChIP GM12878 ENCFF010ZUU 328 bp overlap
ChIP GM12878 ENCFF521IZR 263 bp overlap
ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 335 bp overlap
ChIP GM12878 ENCSR517QHU.BHLHE40.GM12878 394 bp overlap
BORCS8-MEF2B,MEF2B 1 dataset
ChIP GM12878 ENCFF427QAI 406 bp overlap
BRD4 2 datasets
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 257 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
CEBPB 1 dataset
ChIP WA01 ENCSR000EBV.CEBPB.WA01 122 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 224 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 166 bp overlap
DPF2 2 datasets
ChIP GM12878 ENCFF681AJV 475 bp overlap
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 259 bp overlap
EBF1 5 datasets
ChIP GM12878 ENCFF167CZS 122 bp overlap
ChIP GM12878 ENCFF813OXE 187 bp overlap
ChIP GM12878 ENCSR000DZQ.EBF1.GM12878 419 bp overlap
ChIP LCL GSE75503.EBF1.LCL 310 bp overlap
ChIP MUTUL GSE75503.EBF1.MUTUL 864 bp overlap
FEZF2 1 dataset
Motif DE_24h DE_24h-FEZF2_MA2341.1 8 bp overlap
FOXK1 2 datasets
ChIP WTC11 ENCFF875IGU 391 bp overlap
ChIP WTC11 ENCFF875IGU 391 bp overlap
GATA4 1 dataset
ChIP A-549 GSE85002.GATA4.A-549 385 bp overlap
GATA6 2 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 281 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 331 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 123 bp overlap
HAND2 3 datasets
ChIP Kelly GSE94822.HAND2.Kelly 159 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 205 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 430 bp overlap
IKZF1 1 dataset
ChIP GM12878 ENCFF753XDO 443 bp overlap
JUN 1 dataset
ChIP DE_D1 S40-DE-d1-JUN-exp2 456 bp overlap
KDM1A 1 dataset
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 862 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 217 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 109 bp overlap
MAX 5 datasets
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 262 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 293 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 266 bp overlap
ChIP WTC11 ENCFF223QFY 441 bp overlap
ChIP WTC11 ENCFF223QFY 585 bp overlap
MEF2B 1 dataset
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 502 bp overlap
MEIS1 1 dataset
ChIP SEM GSE38339.MEIS1.SEM 126 bp overlap
MYC 2 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 114 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 310 bp overlap
NANOG 5 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 627 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 899 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 381 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 185 bp overlap
NCOA2 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 118 bp overlap
NEUROD1 7 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 473 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 378 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 231 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 172 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 186 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 327 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 282 bp overlap
NFKB1 1 dataset
ChIP HEK293T GSE129618.NFKB1.HEK293T 193 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 288 bp overlap
NR2F1 2 datasets
ChIP GM12878 ENCFF273VKX 206 bp overlap
ChIP GM12878 ENCSR514VYD.NR2F1.GM12878 310 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 109 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 403 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 245 bp overlap
PBX1 1 dataset
Motif DE_24h DE_24h-PBX1_MA0070.2 9 bp overlap
PBX3 2 datasets
ChIP GM12878 ENCFF285BQQ 217 bp overlap
ChIP GM12878 ENCSR000BGR.PBX3.GM12878 171 bp overlap
PKNOX1 2 datasets
ChIP GM12878 ENCFF589FCY 168 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 306 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 731 bp overlap
POU5F1 5 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 135 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 765 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 614 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 537 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 920 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 584 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 283 bp overlap
Prdm14 1 dataset
Motif DE_24h DE_24h-Prdm14_MA1998.2 8 bp overlap
RAD51 1 dataset
ChIP GM12878 ENCSR482TWQ.RAD51.GM12878 244 bp overlap
RARA 1 dataset
Motif DE_24h DE_24h-RARA_MA0730.1 17 bp overlap
RELA 5 datasets
ChIP 786-O GSE86092.RELA.786-O 247 bp overlap
ChIP BJAB_1h-activation GSE117250.RELA.BJAB_1h-activation 152 bp overlap
ChIP GM12878 ENCSR664POU.RELA.GM12878 199 bp overlap
ChIP GM12878 ENCSR664POU.RELA.GM12878 204 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 297 bp overlap
SMAD2 2 datasets
ChIP hESC GSE29422.SMAD2.hESC 204 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 928 bp overlap
SMAD2-3 5 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 340 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 434 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 326 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 891 bp overlap
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 470 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 593 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 743 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 877 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 182 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 139 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 357 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 226 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 243 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 254 bp overlap
STAT3 5 datasets
ChIP OCI-Ly3 GSE50723.STAT3.OCI-Ly3 167 bp overlap
ChIP SU-DHL-2 GSE50723.STAT3.SU-DHL-2 385 bp overlap
ChIP SU-DHL-2 GSE50723.STAT3.SU-DHL-2 134 bp overlap
ChIP TMD8 GSE106844.STAT3.TMD8 754 bp overlap
ChIP TMD8_DMSO GSE123398.STAT3.TMD8_DMSO 731 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 294 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 651 bp overlap
ZMAT4 1 dataset
ChIP WTC11 ENCFF608UXZ 241 bp overlap
ZNF10 1 dataset
ChIP HEK293 ENCSR019WUS.ZNF10.HEK293 213 bp overlap
ZNF816 1 dataset
Motif DE_24h DE_24h-ZNF816_MA1719.2 15 bp overlap