chr1 : 220,430,038 – 220,430,360
322 bp 46 TFs 0 linked genes
This 322 bp open chromatin element has no linked target genes and is bound by 46 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:220,425,038 – 220,435,360
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
46 transcription factors
Source
Cell type
AR 1 dataset
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 225 bp overlap
BRD4 2 datasets
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 185 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 270 bp overlap
CEBPA 1 dataset
ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 211 bp overlap
CEBPB 2 datasets
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 265 bp overlap
ChIP HeLa-S3 ENCFF722WEG 253 bp overlap
CTCF 10 datasets
ChIP HeLa GSE126990.CTCF.HeLa 170 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 170 bp overlap
ChIP HeLa-Kyoto GSE102884.CTCF.HeLa-Kyoto 151 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 239 bp overlap
ChIP MCF-7 ENCFF198DQX 179 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 113 bp overlap
ChIP keratinocyte ENCFF046PBT 174 bp overlap
ChIP keratinocyte ENCFF291YDC 175 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 182 bp overlap
ChIP mammary epithelial cell ENCFF164SPU 200 bp overlap
DEK 1 dataset
ChIP HeLa-S3 ENCSR219MKK.DEK.HeLa-S3 120 bp overlap
DPF2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-K785R 185 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 131 bp overlap
ESR1 1 dataset
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 105 bp overlap
ESRRA 1 dataset
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 75 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 188 bp overlap
EZH1 1 dataset
ChIP ProEs_SHCTR GSE59087.EZH1.ProEs_SHCTR 167 bp overlap
FOS 1 dataset
ChIP HeLa-S3 ENCSR000EZE.FOS.HeLa-S3 167 bp overlap
FOXA1 10 datasets
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 122 bp overlap
ChIP T-47D_JC4742 GSE126004.FOXA1.T-47D_JC4742 297 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 322 bp overlap
ChIP T-47D_JC4744 GSE126004.FOXA1.T-47D_JC4744 220 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 322 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 322 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 322 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 321 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 199 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 295 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 278 bp overlap
ChIP DE DE-FOXA2-2 252 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 285 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-2 227 bp overlap
ChIP OACP4-C GSE132680.GATA6.OACP4-C 244 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 161 bp overlap
HNF4A 1 dataset
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 104 bp overlap
KDM5B 1 dataset
ChIP T-47D GSE46055.KDM5B.T-47D 111 bp overlap
KLF5 1 dataset
ChIP HCC95_E419Q GSE88976.KLF5.HCC95_E419Q 185 bp overlap
KMT2C 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 300 bp overlap
MAX 1 dataset
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 170 bp overlap
MYC 1 dataset
ChIP HeLa-S3 ENCSR000EZD.MYC.HeLa-S3 141 bp overlap
NR2F2 1 dataset
ChIP MCF-7 ENCSR000BUY.NR2F2.MCF-7 123 bp overlap
NR3C1 2 datasets
ChIP HeLa-B2_P65KD_TA_TNFA GSE24518.NR3C1.HeLa-B2_P65KD_TA_TNFA 124 bp overlap
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 114 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 185 bp overlap
PGR 2 datasets
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 243 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 237 bp overlap
RAD21 2 datasets
ChIP HeLa-S3 ENCFF775CHI 142 bp overlap
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 171 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 166 bp overlap
RFX5 1 dataset
ChIP HeLa-S3 ENCFF703XPB 267 bp overlap
RUNX1 1 dataset
ChIP MCF-10A GSE129314.RUNX1.MCF-10A 153 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 152 bp overlap
SMARCA4 4 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 271 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 116 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 214 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 322 bp overlap
SMARCC1 1 dataset
ChIP G-401_Dox GSE71504.SMARCC1.G-401_Dox 162 bp overlap
SMC3 5 datasets
ChIP HeLa GSE126990.SMC3.HeLa 165 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 165 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 165 bp overlap
ChIP HeLa-S3 ENCFF992MML 228 bp overlap
ChIP HeLa-S3 ENCSR000ECS.SMC3.HeLa-S3 146 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 322 bp overlap
STAG1 3 datasets
ChIP HMEC-1 GSE101921.STAG1.HMEC-1 123 bp overlap
ChIP HeLa GSE126990.STAG1.HeLa 199 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 199 bp overlap
STAG2 1 dataset
ChIP HMEC-1 GSE101921.STAG2.HMEC-1 158 bp overlap
STAT3 4 datasets
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 320 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 322 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 267 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 266 bp overlap
TEAD1 5 datasets
ChIP HEK293_siE1A GSE130135.TEAD1.HEK293_siE1A 161 bp overlap
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 194 bp overlap
ChIP MSTO GSE68170.TEAD1.MSTO 200 bp overlap
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 231 bp overlap
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 193 bp overlap
TEAD3 1 dataset
ChIP HepG2 ENCFF054UUL 281 bp overlap
TEAD4 12 datasets
ChIP BJ_fibroblast GSE114367.TEAD4.BJ_fibroblast 194 bp overlap
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 181 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 322 bp overlap
ChIP H1 ENCFF778PAX 144 bp overlap
ChIP Ishikawa ENCFF772OTG 231 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 184 bp overlap
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 296 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.TEAD4.PC-9_1DF_DMSO 309 bp overlap
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 322 bp overlap
ChIP PC-9_2DF_DMSO GSE131687.TEAD4.PC-9_2DF_DMSO 266 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 193 bp overlap
ChIP T-47D_Veh GSE125594.TEAD4.T-47D_Veh 176 bp overlap
YAP1 3 datasets
ChIP MCF-10A GSE97972.YAP1.MCF-10A 191 bp overlap
ChIP MCF-7 GSE107013.YAP1.MCF-7 165 bp overlap
ChIP hiPSC GSE111930.YAP1.hiPSC 163 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 140 bp overlap
YY1AP1 4 datasets
ChIP MCF-10A_DOX GSE115787.YY1AP1.MCF-10A_DOX 236 bp overlap
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 303 bp overlap
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 322 bp overlap
ChIP PC-9_2DF_DMSO GSE131687.YY1AP1.PC-9_2DF_DMSO 309 bp overlap
ZHX1 1 dataset
ChIP HeLa-S3 ENCSR855WKQ.ZHX1.HeLa-S3 153 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 229 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 217 bp overlap
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