chr13 : 63,408,297 63,408,781
484 bp 76 TFs 0 linked genes
This 484 bp open chromatin element has no linked target genes and is bound by 76 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:63,403,297 – 63,413,781
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
76 transcription factors
Source
Cell type
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 128 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 190 bp overlap
BACH2 1 dataset
Motif DE_12h DE_12h-BACH2_MA1470.2 19 bp overlap
BRCA1 1 dataset
ChIP K-562 ENCSR223MLH.BRCA1.K-562 484 bp overlap
BRD4 1 dataset
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 214 bp overlap
BRD9 1 dataset
ChIP G-401 GSE120234.BRD9.G-401 484 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 277 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 408 bp overlap
CHD7 2 datasets
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 216 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 484 bp overlap
CREB5 2 datasets
ChIP SK-N-SH ENCFF144PMI 345 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 196 bp overlap
CSRNP3 1 dataset
ChIP SK-N-SH ENCFF710BXD 287 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 327 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 304 bp overlap
ESR1 2 datasets
Motif DE_12h DE_12h-ESR1_MA0112.4 15 bp overlap
ChIP ZR751 ERP000783.ESR1.ZR751 80 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 274 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 168 bp overlap
FOSL2 1 dataset
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 196 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 159 bp overlap
GATA2 5 datasets
ChIP ESF GSE108408.GATA2.ESF 145 bp overlap
ChIP SH-SY5Y ENCFF485YIB 264 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 243 bp overlap
ChIP SK-N-SH ENCFF764OZD 316 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 242 bp overlap
GATA3 7 datasets
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 272 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 275 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 217 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 453 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 188 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 205 bp overlap
ChIP SK-N-SH ENCFF040SSB 355 bp overlap
GATA4 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 273 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 340 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 289 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 420 bp overlap
IRF3 1 dataset
Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 445 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 331 bp overlap
MAML3 1 dataset
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 222 bp overlap
MED1 2 datasets
ChIP SGBS GSE64233.MED1.SGBS 250 bp overlap
ChIP SGBS GSE64233.MED1.SGBS 109 bp overlap
MYCN 1 dataset
ChIP Kelly GSE94822.MYCN.Kelly 129 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 333 bp overlap
ChIP hESC GSE18292.NANOG.hESC 122 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 71 bp overlap
NFIC 1 dataset
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 171 bp overlap
Nfat5 1 dataset
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
Nr2e1 1 dataset
Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap
Nr2f6 1 dataset
Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 438 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 267 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 389 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 336 bp overlap
PPARG 2 datasets
ChIP ASC GSE21366.PPARG.ASC 236 bp overlap
ChIP SGBS GSE41629.PPARG.SGBS 252 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 239 bp overlap
RAD21 3 datasets
ChIP SK-N-SH ENCFF747MAS 187 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 175 bp overlap
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 375 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 287 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 395 bp overlap
RFX4 1 dataset
Motif DE_12h DE_12h-RFX4_MA0799.3 13 bp overlap
Rarb 1 dataset
Motif DE_12h DE_12h-Rarb_MA0858.1 17 bp overlap
SMARCA2 6 datasets
ChIP NPC_AM GSE122631.SMARCA2.NPC_AM 335 bp overlap
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 309 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 484 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 484 bp overlap
ChIP NPC_R1159Q GSE122631.SMARCA2.NPC_R1159Q 322 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 237 bp overlap
SMARCA4 11 datasets
ChIP NGP GSE134626.SMARCA4.NGP 325 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 355 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 171 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 186 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 484 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 484 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 199 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 128 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 484 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 484 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 314 bp overlap
SMARCB1 1 dataset
ChIP TTC-1240_R377H GSE124903.SMARCB1.TTC-1240_R377H 245 bp overlap
SMARCC1 2 datasets
ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 484 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 484 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 275 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 211 bp overlap
SS18 1 dataset
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 274 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 177 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 177 bp overlap
STAT3 1 dataset
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 132 bp overlap
Stat2 2 datasets
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 348 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 270 bp overlap
TCF12 2 datasets
ChIP SK-N-SH ENCFF147AHB 141 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 115 bp overlap
TCF4 3 datasets
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 264 bp overlap
ChIP SK-N-SH ENCFF270OWF 327 bp overlap
ChIP SK-N-SH ENCFF270OWF 135 bp overlap
TEAD4 5 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 352 bp overlap
ChIP H1 ENCFF778PAX 244 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 116 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 352 bp overlap
ChIP SK-N-SH ENCSR000BUQ.TEAD4.SK-N-SH 168 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 368 bp overlap
TOX2 2 datasets
ChIP SK-N-SH ENCFF415OYE 257 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR226NRS.TOX2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 219 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 381 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 327 bp overlap
TWIST1 7 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 426 bp overlap
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 484 bp overlap
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 362 bp overlap
ChIP SHEP-21N_24h GSE80151.TWIST1.SHEP-21N_24h 463 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.TWIST1.SHEP-21N_DOX_0H 484 bp overlap
ChIP SHEP-21N_DOX_24H GSE80151.TWIST1.SHEP-21N_DOX_24H 166 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 426 bp overlap
ZBTB24 1 dataset
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 227 bp overlap
ZKSCAN2 1 dataset
ChIP HEK293T GSE78099.ZKSCAN2.HEK293T 118 bp overlap
ZNF184 1 dataset
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
ZNF549 1 dataset
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
ZNF558 1 dataset
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
ZNF573 1 dataset
ChIP HEK293T GSE78099.ZNF573.HEK293T 163 bp overlap
ZNF582 1 dataset
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
ZNF667 1 dataset
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap
ZNF75A 1 dataset
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap