chr13 : 62,212,334 62,212,613
279 bp 66 TFs 1 linked gene
This 279 bp open chromatin element is linked to LINC01075 and is bound by 66 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC01075 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:62,207,334 – 62,217,613
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
66 transcription factors
Source
Cell type
AR 1 dataset
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 137 bp overlap
ATF3 1 dataset
ChIP Hep-G2 ENCSR402ZCY.ATF3.Hep-G2 116 bp overlap
BRD4 1 dataset
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 279 bp overlap
BRF1 1 dataset
ChIP H9_Activin GSE94418.BRF1.H9_Activin 171 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 216 bp overlap
CTCF 48 datasets
ChIP A-549 ENCSR000DNA.CTCF.A-549 155 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 149 bp overlap
ChIP C4-2B ENCFF821XVN 279 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 145 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 176 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 182 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 114 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 122 bp overlap
ChIP GM12872 ENCFF697BYI 277 bp overlap
ChIP GM23338 ENCFF772DML 98 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 277 bp overlap
ChIP H9 ENCFF152GTF 223 bp overlap
ChIP HCT116 ENCFF209YMI 230 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 116 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 221 bp overlap
ChIP HeLa-S3 ENCFF565UFR 161 bp overlap
ChIP HeLa-S3 ENCFF626XQK 251 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 194 bp overlap
ChIP HeLa-S3 ENCSR000DLO.CTCF.HeLa-S3 111 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 279 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 221 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 234 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 242 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 177 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 98 bp overlap
ChIP HepG2 ENCFF127KUP 231 bp overlap
ChIP HepG2 ENCFF194VBQ 279 bp overlap
ChIP HepG2 ENCFF194VBQ 74 bp overlap
ChIP HepG2 ENCFF348BUL 197 bp overlap
ChIP HepG2 ENCFF757EKU 147 bp overlap
ChIP MCF-7_NORMOXIA GSE78113.CTCF.MCF-7_NORMOXIA 223 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 279 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 96 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 199 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 151 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 165 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 246 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 188 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 187 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 137 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 211 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 149 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 216 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 207 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 150 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 193 bp overlap
E2F4 2 datasets
ChIP Hep-G2 ENCSR924LSO.E2F4.Hep-G2 168 bp overlap
ChIP HepG2 ENCFF311TOD 279 bp overlap
ERG 1 dataset
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 223 bp overlap
ESR1 1 dataset
ChIP Ishikawa GSE99905.ESR1.Ishikawa 223 bp overlap
FOXK1 1 dataset
ChIP Hep-G2 ENCSR603BJQ.FOXK1.Hep-G2 141 bp overlap
GABPB1 1 dataset
ChIP HepG2 ENCFF315AWN 279 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 217 bp overlap
HIC2 1 dataset
ChIP HepG2 ENCFF927POV 279 bp overlap
HLF 1 dataset
ChIP HepG2 ENCFF854JLR 84 bp overlap
HNF1B 1 dataset
ChIP Hep-G2 ENCSR127XTZ.HNF1B.Hep-G2 194 bp overlap
HNF4A 5 datasets
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 167 bp overlap
ChIP Hep-G2 ENCSR000BLF.HNF4A.Hep-G2 135 bp overlap
ChIP Hep-G2 ENCSR000EEU.HNF4A.Hep-G2 111 bp overlap
ChIP Hep-G2 ERP000209.HNF4A.Hep-G2 124 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 123 bp overlap
HNF4G 1 dataset
ChIP Hep-G2 ENCSR000BNJ.HNF4G.Hep-G2 110 bp overlap
HNRNPL 4 datasets
ChIP Hep-G2 GSE120104.HNRNPL.Hep-G2 240 bp overlap
ChIP Hep-G2 ENCSR315JJE.HNRNPL.Hep-G2 231 bp overlap
ChIP HepG2 ENCFF671UYF 169 bp overlap
ChIP HepG2 ENCFF684GAM 172 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 147 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 197 bp overlap
KDM5B 1 dataset
ChIP Hep-G2 ENCSR227MRE.KDM5B.Hep-G2 173 bp overlap
LIN54 2 datasets
ChIP Hep-G2 ENCSR597MCV.LIN54.Hep-G2 279 bp overlap
ChIP HepG2 ENCFF662XDE 279 bp overlap
LMO2 1 dataset
ChIP Kasumi-1_SIRUNX1ETO GSE60130.LMO2.Kasumi-1_SIRUNX1ETO 158 bp overlap
MAX 1 dataset
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 132 bp overlap
MNX1 1 dataset
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 212 bp overlap
MTF1 1 dataset
Motif DE_12h DE_12h-MTF1_MA0863.1 14 bp overlap
NFYB 3 datasets
ChIP HeLa-S3 ENCFF854TNJ 128 bp overlap
ChIP Hep-G2 ENCSR935GZV.NFYB.Hep-G2 151 bp overlap
ChIP HepG2 ENCFF174VYX 52 bp overlap
NFYC 1 dataset
ChIP Hep-G2 ENCSR569ARC.NFYC.Hep-G2 181 bp overlap
NOTCH3 1 dataset
ChIP TALL-1_GSI GSE104261.NOTCH3.TALL-1_GSI 173 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 279 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 279 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 237 bp overlap
PCBP2 3 datasets
ChIP Hep-G2 ENCSR945NSF.PCBP2.Hep-G2 97 bp overlap
ChIP Hep-G2 GSE120104.PCBP2.Hep-G2 97 bp overlap
ChIP HepG2 ENCFF033VWK 105 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
PTBP1 2 datasets
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 231 bp overlap
ChIP Hep-G2 GSE120104.PTBP1.Hep-G2 228 bp overlap
RAD21 5 datasets
ChIP H1 ENCFF698EWO 239 bp overlap
ChIP Hep-G2 ENCSR054FKH.RAD21.Hep-G2 128 bp overlap
ChIP HepG2 ENCFF360ZSW 217 bp overlap
ChIP HepG2 ENCFF906QIS 214 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 127 bp overlap
RBM39 1 dataset
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 186 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 222 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 254 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 232 bp overlap
SMC1A 1 dataset
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 189 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SPI1 1 dataset
ChIP macrophage_IFNG GSE47188.SPI1.macrophage_IFNG 250 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 279 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 277 bp overlap
STAG1 1 dataset
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 142 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 242 bp overlap
TBX5 1 dataset
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
TFDP2 1 dataset
ChIP Hep-G2 ENCSR069JKP.TFDP2.Hep-G2 164 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 267 bp overlap
TRIM28 2 datasets
ChIP HCT-116 GSE72622.TRIM28.HCT-116 195 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 242 bp overlap
Tbx6 1 dataset
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
Tfcp2l1 1 dataset
Motif DE_12h DE_12h-Tfcp2l1_MA0145.2 14 bp overlap
XRCC5 1 dataset
ChIP HepG2 ENCFF330PDO 279 bp overlap
YY1 1 dataset
ChIP Hep-G2 ENCSR000BNT.YY1.Hep-G2 184 bp overlap
ZBTB2 1 dataset
ChIP Hep-G2 GSE97661.ZBTB2.Hep-G2 152 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF684 1 dataset
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap