chr13 : 54,945,991 54,946,313
322 bp 91 TFs 0 linked genes
This 322 bp open chromatin element has no linked target genes and is bound by 91 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:54,940,991 – 54,951,313
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
91 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 303 bp overlap
ASCL1 1 dataset
Motif ES_0h ES_0h-ASCL1_MA1631.2 9 bp overlap
ATOH7 1 dataset
Motif ES_0h ES_0h-ATOH7_MA1468.1 10 bp overlap
Ascl2 1 dataset
Motif ES_0h ES_0h-Ascl2_MA0816.1 10 bp overlap
Atoh1 1 dataset
Motif ES_0h ES_0h-Atoh1_MA0461.3 8 bp overlap
BRD4 3 datasets
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 209 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 295 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-pos 310 bp overlap
CDX2 2 datasets
ChIP COLO-320 GSE30026.CDX2.COLO-320 190 bp overlap
ChIP intestinal-cell GSE115314.CDX2.intestinal-cell 322 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 281 bp overlap
Dmrt1 1 dataset
Motif ES_0h ES_0h-Dmrt1_MA1603.2 9 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 228 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 223 bp overlap
ChIP hESC GSE17917.EP300.hESC 322 bp overlap
FIGLA 1 dataset
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
FOXA1 1 dataset
ChIP LNCaP GSE64656.FOXA1.LNCaP 88 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000BNR.HDAC2.WA01 141 bp overlap
HOXA4 1 dataset
Motif ES_0h ES_0h-HOXA4_MA1496.2 7 bp overlap
HOXB4 1 dataset
Motif ES_0h ES_0h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif ES_0h ES_0h-HOXC4_MA1504.2 6 bp overlap
HOXC6 1 dataset
ChIP 22Rv1 GSE129951.HOXC6.22Rv1 322 bp overlap
HOXD4 1 dataset
Motif ES_0h ES_0h-HOXD4_MA1507.2 6 bp overlap
Irf1 1 dataset
Motif ES_0h ES_0h-Irf1_MA0050.4 11 bp overlap
JUN 3 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 278 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 322 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 322 bp overlap
KLF4 1 dataset
ChIP hiPSC GSE56567.KLF4.hiPSC 147 bp overlap
MAX 3 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 258 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 233 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 167 bp overlap
MED1 1 dataset
ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 322 bp overlap
MEF2A 1 dataset
Motif ES_0h ES_0h-MEF2A_MA0052.5 10 bp overlap
MEF2B 1 dataset
Motif ES_0h ES_0h-MEF2B_MA0660.1 12 bp overlap
MEF2D 1 dataset
Motif ES_0h ES_0h-MEF2D_MA0773.1 12 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 322 bp overlap
MSC 1 dataset
Motif ES_0h ES_0h-MSC_MA0665.1 10 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 258 bp overlap
MYF6 1 dataset
Motif ES_0h ES_0h-MYF6_MA0667.1 10 bp overlap
MYOD1 1 dataset
Motif ES_0h ES_0h-MYOD1_MA0499.3 9 bp overlap
Msgn1 1 dataset
Motif ES_0h ES_0h-Msgn1_MA1524.3 10 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 293 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 322 bp overlap
ChIP H1 ENCFF747ZPQ 181 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 322 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 322 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 292 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 322 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 322 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 322 bp overlap
ChIP hESC GSE20650.NANOG.hESC 322 bp overlap
ChIP hESC GSE18292.NANOG.hESC 322 bp overlap
NFATC3 1 dataset
Motif ES_0h ES_0h-NFATC3_MA0625.3 6 bp overlap
NFATC4 1 dataset
Motif ES_0h ES_0h-NFATC4_MA1525.3 9 bp overlap
NIPBL 1 dataset
ChIP hESC GSE64758.NIPBL.hESC 206 bp overlap
Nanog 1 dataset
Motif ES_0h ES_0h-Nanog_MA2339.1 7 bp overlap
Nfat5 1 dataset
Motif ES_0h ES_0h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif ES_0h ES_0h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif ES_0h ES_0h-Nfatc2_MA0152.3 8 bp overlap
OLIG1 1 dataset
Motif ES_0h ES_0h-OLIG1_MA0826.1 10 bp overlap
OLIG2 1 dataset
Motif ES_0h ES_0h-OLIG2_MA0678.1 10 bp overlap
OLIG3 1 dataset
Motif ES_0h ES_0h-OLIG3_MA0827.1 10 bp overlap
PGR 1 dataset
Motif ES_0h ES_0h-PGR_MA2327.1 9 bp overlap
POU2F1 1 dataset
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
POU2F1::SOX2 2 datasets
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F3 1 dataset
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F4 1 dataset
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU5F1 7 datasets
ChIP GM23338 ENCFF333SNB 302 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 322 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 217 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 322 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 322 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 322 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 322 bp overlap
POU6F1 1 dataset
Motif ES_0h ES_0h-POU6F1_MA1549.2 7 bp overlap
Ptf1A 1 dataset
Motif ES_0h ES_0h-Ptf1A_MA1620.2 8 bp overlap
RAD21 1 dataset
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 202 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 322 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 322 bp overlap
Rhox11 1 dataset
Motif ES_0h ES_0h-Rhox11_MA0629.2 9 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 123 bp overlap
SMAD3 6 datasets
ChIP BG03 GSE21614.SMAD3.BG03 234 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 322 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 62 bp overlap
ChIP hESC GSE75297.SMAD3.hESC 255 bp overlap
ChIP hESC_DIFF_D0 GSE75297.SMAD3.hESC_DIFF_D0 299 bp overlap
ChIP hESC_DIFF_D1 GSE75297.SMAD3.hESC_DIFF_D1 293 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 249 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 322 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 303 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 322 bp overlap
SNAI2 1 dataset
Motif ES_0h ES_0h-SNAI2_MA0745.3 8 bp overlap
SNAI3 1 dataset
Motif ES_0h ES_0h-SNAI3_MA1559.2 9 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 165 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 322 bp overlap
SOX8 1 dataset
Motif ES_0h ES_0h-SOX8_MA0868.3 7 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 307 bp overlap
SRY 1 dataset
Motif ES_0h ES_0h-SRY_MA0084.2 7 bp overlap
Sox17 1 dataset
Motif ES_0h ES_0h-Sox17_MA0078.3 10 bp overlap
Sox5 1 dataset
Motif ES_0h ES_0h-Sox5_MA0087.3 8 bp overlap
Sox6 1 dataset
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif ES_0h ES_0h-Sox7_MA2095.1 10 bp overlap
TBR1 1 dataset
Motif ES_0h ES_0h-TBR1_MA0802.2 9 bp overlap
TBX3 1 dataset
Motif ES_0h ES_0h-TBX3_MA1566.3 9 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 322 bp overlap
TCF21 1 dataset
Motif ES_0h ES_0h-TCF21_MA1568.2 10 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 322 bp overlap
TCF4 1 dataset
Motif ES_0h ES_0h-TCF4_MA0830.3 8 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 322 bp overlap
TEAD4 1 dataset
ChIP hESC GSE99202.TEAD4.hESC 322 bp overlap
TFAP4 1 dataset
Motif ES_0h ES_0h-TFAP4_MA1570.1 10 bp overlap
ZEB1 1 dataset
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 322 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 149 bp overlap
ZNF582 1 dataset
Motif ES_0h ES_0h-ZNF582_MA1983.2 19 bp overlap
ZNF75A 1 dataset
Motif ES_0h ES_0h-ZNF75A_MA2097.1 12 bp overlap