chr1 : 215,023,880 – 215,024,463
583 bp 54 TFs 0 linked genes
This 583 bp open chromatin element has no linked target genes and is bound by 54 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:215,018,880 – 215,029,463
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
54 transcription factors
Source
Cell type
AFF4 3 datasets
ChIP HeLa GSE40632.AFF4.HeLa 199 bp overlap
ChIP HeLa_DOX GSE40632.AFF4.HeLa_DOX 175 bp overlap
ChIP HeLa_DOX_EGF GSE40632.AFF4.HeLa_DOX_EGF 262 bp overlap
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 190 bp overlap
ARNTL 1 dataset
ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 263 bp overlap
ATOH7 1 dataset
Motif DE_12h DE_12h-ATOH7_MA1468.1 10 bp overlap
BHLHA15 1 dataset
Motif DE_12h DE_12h-BHLHA15_MA0607.2 10 bp overlap
BRD2 2 datasets
ChIP SUM159PT_JQ1 GSE116879.BRD2.SUM159PT_JQ1 263 bp overlap
ChIP SUM159PT_JQ1_MGSK2801 GSE116879.BRD2.SUM159PT_JQ1_MGSK2801 74 bp overlap
BRD4 6 datasets
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 212 bp overlap
ChIP SUM159PT_100nMtrametinib300nMJQ1_24h GSE87418.BRD4.SUM159PT_100nMtrametinib300nMJQ1_24h 217 bp overlap
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 134 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 208 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 61 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 193 bp overlap
CEBPA 1 dataset
ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 73 bp overlap
CEBPG 1 dataset
ChIP MCF-7 ENCFF155HZI 106 bp overlap
CRY1 3 datasets
ChIP U2OS GSE44236.CRY1.U2OS 201 bp overlap
ChIP U2OS GSE130602.CRY1.U2OS 259 bp overlap
ChIP U2OS_DMSO GSE130506.CRY1.U2OS_DMSO 258 bp overlap
CTCF 48 datasets
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 277 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 201 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 226 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 255 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 256 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 256 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 196 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 251 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 238 bp overlap
ChIP HEC-1-B_R1-mutation GSE140868.CTCF.HEC-1-B_R1-mutation 80 bp overlap
ChIP HFFc6 ENCFF005CJI 461 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 181 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 146 bp overlap
ChIP MCF-7 ENCFF139NQI 277 bp overlap
ChIP MCF-7 ENCFF162GNE 245 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF210JUZ 335 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 364 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 200 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 166 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 236 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 187 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 130 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 242 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 301 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 322 bp overlap
ChIP PC-3 ENCFF487TUI 351 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 294 bp overlap
ChIP SK-N-SH ENCFF731NJX 251 bp overlap
ChIP SK-N-SH ENCSR000EIC.CTCF.SK-N-SH 119 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 242 bp overlap
ChIP T-47D GSE120162.CTCF.T-47D 138 bp overlap
ChIP T-47D_NaCl-7-5min GSE111923.CTCF.T-47D_NaCl-7-5min 239 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 388 bp overlap
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 432 bp overlap
ChIP T-47D_serum GSE120162.CTCF.T-47D_serum 159 bp overlap
ChIP T-47D_triptolide GSE111923.CTCF.T-47D_triptolide 559 bp overlap
ChIP WA01_MESEN_STEM GSE52457.CTCF.WA01_MESEN_STEM 151 bp overlap
ChIP endodermal cell ENCFF471YCZ 368 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 248 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 158 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 299 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 275 bp overlap
ChIP thyroid-gland ENCSR033KMZ.CTCF.thyroid-gland 240 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF093OYK 439 bp overlap
ChIP BLaER1 ENCFF262VBH 208 bp overlap
ChIP BLaER1 ENCFF858JKM 190 bp overlap
ELL2 1 dataset
ChIP HeLa GSE40632.ELL2.HeLa 173 bp overlap
ESR1 3 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 190 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 220 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 197 bp overlap
FOXA2 2 datasets
ChIP liver ENCFF877SFI 75 bp overlap
ChIP liver ENCSR310NYI.FOXA2.liver 53 bp overlap
GATA2 1 dataset
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 93 bp overlap
GRHL2 1 dataset
ChIP LNCaP GSE80256.GRHL2.LNCaP 306 bp overlap
HAND2 2 datasets
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
HNF4A 1 dataset
Motif DE_12h DE_12h-HNF4A_MA1494.2 14 bp overlap
JUN 1 dataset
ChIP MCF-7_abemaciclib GSE157385.JUN.MCF-7_abemaciclib 277 bp overlap
MED1 6 datasets
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 189 bp overlap
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 64 bp overlap
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 119 bp overlap
ChIP hMSC-TERT4_adipocyte-D1 GSE113253.MED1.hMSC-TERT4_adipocyte-D1 64 bp overlap
ChIP hMSC-TERT4_adipocyte-D3 GSE113253.MED1.hMSC-TERT4_adipocyte-D3 73 bp overlap
ChIP hMSC-TERT4_osteoblast-D1 GSE113253.MED1.hMSC-TERT4_osteoblast-D1 178 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 165 bp overlap
NEUROD1 1 dataset
Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap
NEUROG2 2 datasets
Motif DE_12h DE_12h-NEUROG2_MA0669.1 10 bp overlap
Motif DE_12h DE_12h-NEUROG2_MA1642.2 7 bp overlap
NRIP1 1 dataset
ChIP MCF-7 ERP005838.NRIP1.MCF-7 208 bp overlap
Neurod2 1 dataset
Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap
OLIG1 1 dataset
Motif DE_12h DE_12h-OLIG1_MA0826.1 10 bp overlap
OLIG3 1 dataset
Motif DE_12h DE_12h-OLIG3_MA0827.1 10 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH3 GSE83726.PAX3-FOXO1.RH3 191 bp overlap
POU2F2 1 dataset
ChIP HNPC_UNDIF GSE74814.POU2F2.HNPC_UNDIF 119 bp overlap
Ptf1A 2 datasets
Motif DE_12h DE_12h-Ptf1A_MA1618.2 9 bp overlap
Motif DE_12h DE_12h-Ptf1A_MA1618.2 9 bp overlap
RAD21 9 datasets
ChIP GP5D GSE51234.RAD21.GP5D 268 bp overlap
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 180 bp overlap
ChIP MCF-7 ENCFF694KOM 294 bp overlap
ChIP MCF-7 ENCFF724VCQ 257 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 341 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 264 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 306 bp overlap
ChIP T-47D_triptolide GSE111923.RAD21.T-47D_triptolide 349 bp overlap
RELA 1 dataset
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 391 bp overlap
SCRT1 1 dataset
Motif DE_12h DE_12h-SCRT1_MA0743.3 10 bp overlap
SMC1 2 datasets
ChIP HAP1 GSE94992.SMC1.HAP1 188 bp overlap
ChIP MCF-10A GSE101921.SMC1.MCF-10A 184 bp overlap
SMC1A 1 dataset
ChIP MCF-7_EtOH GSE115602.SMC1A.MCF-7_EtOH 222 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 188 bp overlap
STAG1 2 datasets
ChIP MCF-7 ERP000209.STAG1.MCF-7 229 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 108 bp overlap
STAG2 1 dataset
ChIP MCF-10A GSE101921.STAG2.MCF-10A 312 bp overlap
STAT3 7 datasets
ChIP HCC1187 GSE152203.STAT3.HCC1187 187 bp overlap
ChIP MCF-10A ENCSR000DOZ.STAT3.MCF-10A 126 bp overlap
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 166 bp overlap
ChIP T-47D_JC4751 GSE126004.STAT3.T-47D_JC4751 287 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 191 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 231 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 243 bp overlap
Six3 1 dataset
Motif DE_12h DE_12h-Six3_MA0631.2 11 bp overlap
TAL1::TCF3 1 dataset
Motif DE_12h DE_12h-TAL1TCF3_MA0091.2 10 bp overlap
TCF12 1 dataset
ChIP Hep-G2 ENCSR000BJG.TCF12.Hep-G2 127 bp overlap
TCF21 1 dataset
Motif DE_12h DE_12h-TCF21_MA1568.2 10 bp overlap
TEAD4 1 dataset
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 144 bp overlap
TFAP4 1 dataset
Motif DE_12h DE_12h-TFAP4_MA1570.1 10 bp overlap
TP63 3 datasets
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 59 bp overlap
ChIP keratinocyte_epidermal GSE67382.TP63.keratinocyte_epidermal 69 bp overlap
ChIP keratinocyte_epidermal GSE67382.TP63.keratinocyte_epidermal 106 bp overlap
TWIST1 1 dataset
Motif DE_12h DE_12h-TWIST1_MA1123.3 8 bp overlap
Tcf21 1 dataset
Motif DE_12h DE_12h-Tcf21_MA0832.2 10 bp overlap
ZBTB12 1 dataset
Motif DE_12h DE_12h-ZBTB12_MA1649.2 7 bp overlap
ZBTB18 1 dataset
Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap
ZNF143 2 datasets
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 149 bp overlap
ChIP HeLa GSE39263.ZNF143.HeLa 215 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
Huangfu Lab · Publications · Resources · Contact