chr12 : 95,549,780 95,549,971
191 bp 115 TFs 2 linked genes
This 191 bp open chromatin element is linked to USP44 and PGAM1P5 and is bound by 115 transcription factors.
Linked Genes
2 genes
Distance
Gene Expression Dist. to TSS Distance Link type
USP44 961 bp At TSS Proximity
PGAM1P5 1.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:95,544,780 – 95,554,971
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
115 transcription factors
Source
Cell type
ALX3 1 dataset
Motif ES_0h ES_0h-ALX3_MA0634.2 6 bp overlap
ARGFX 1 dataset
Motif ES_0h ES_0h-ARGFX_MA1463.2 8 bp overlap
Alx1 1 dataset
Motif ES_0h ES_0h-Alx1_MA0854.2 8 bp overlap
Alx4 1 dataset
Motif ES_0h ES_0h-Alx4_MA0853.2 12 bp overlap
Arx 1 dataset
Motif ES_0h ES_0h-Arx_MA0874.2 10 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 132 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 191 bp overlap
CHD1 2 datasets
ChIP WA01 ENCSR000AQK.CHD1.WA01 191 bp overlap
ChIP WA01 ENCSR000EBU.CHD1.WA01 57 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCFF432ZEW 191 bp overlap
CTCF 1 dataset
ChIP body of pancreas ENCFF438KTE 95 bp overlap
DRGX 1 dataset
Motif ES_0h ES_0h-DRGX_MA1481.2 6 bp overlap
EHF 1 dataset
Motif ES_0h ES_0h-EHF_MA0598.4 9 bp overlap
ELF1 1 dataset
Motif ES_0h ES_0h-ELF1_MA0473.4 9 bp overlap
ELF2 1 dataset
Motif ES_0h ES_0h-ELF2_MA1483.3 10 bp overlap
ELF3 1 dataset
Motif ES_0h ES_0h-ELF3_MA0640.3 9 bp overlap
ELK4 1 dataset
Motif ES_0h ES_0h-ELK4_MA0076.3 9 bp overlap
EMX1 1 dataset
Motif ES_0h ES_0h-EMX1_MA0612.3 6 bp overlap
EMX2 1 dataset
Motif ES_0h ES_0h-EMX2_MA0886.2 6 bp overlap
EN1 1 dataset
Motif ES_0h ES_0h-EN1_MA0027.3 6 bp overlap
EN2 1 dataset
Motif ES_0h ES_0h-EN2_MA0642.3 7 bp overlap
ERF 1 dataset
Motif ES_0h ES_0h-ERF_MA0760.2 9 bp overlap
ESX1 1 dataset
Motif ES_0h ES_0h-ESX1_MA0644.3 7 bp overlap
ETS1 4 datasets
Motif ES_0h ES_0h-ETS1_MA0098.4 9 bp overlap
ChIP GM23338 ENCFF701IZH 191 bp overlap
ChIP THP-6_shCtrl GSE138516.ETS1.THP-6_shCtrl 154 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 125 bp overlap
ETV1 1 dataset
Motif ES_0h ES_0h-ETV1_MA0761.3 9 bp overlap
ETV2 1 dataset
Motif ES_0h ES_0h-ETV2_MA0762.2 9 bp overlap
EVX1 1 dataset
Motif ES_0h ES_0h-EVX1_MA0887.2 6 bp overlap
EVX2 1 dataset
Motif ES_0h ES_0h-EVX2_MA0888.2 6 bp overlap
Erg 1 dataset
Motif ES_0h ES_0h-Erg_MA0474.4 10 bp overlap
FLI1 1 dataset
Motif ES_0h ES_0h-FLI1_MA0475.3 9 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 191 bp overlap
GABPA 1 dataset
Motif ES_0h ES_0h-GABPA_MA0062.4 10 bp overlap
GBX1 1 dataset
Motif ES_0h ES_0h-GBX1_MA0889.2 7 bp overlap
GSX1 1 dataset
Motif ES_0h ES_0h-GSX1_MA0892.2 6 bp overlap
GSX2 1 dataset
Motif ES_0h ES_0h-GSX2_MA0893.3 7 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 147 bp overlap
HOXA1 1 dataset
Motif ES_0h ES_0h-HOXA1_MA1495.2 6 bp overlap
HOXA2 1 dataset
Motif ES_0h ES_0h-HOXA2_MA0900.3 6 bp overlap
HOXA3 1 dataset
Motif ES_0h ES_0h-HOXA3_MA2119.1 7 bp overlap
HOXB1 1 dataset
Motif ES_0h ES_0h-HOXB1_MA2093.1 7 bp overlap
HOXB2 1 dataset
Motif ES_0h ES_0h-HOXB2_MA0902.3 6 bp overlap
HOXB3 1 dataset
Motif ES_0h ES_0h-HOXB3_MA0903.2 6 bp overlap
HOXB5 1 dataset
Motif ES_0h ES_0h-HOXB5_MA0904.3 6 bp overlap
HOXC8 1 dataset
Motif ES_0h ES_0h-HOXC8_MA1505.2 6 bp overlap
HOXD3 1 dataset
Motif ES_0h ES_0h-HOXD3_MA0912.2 8 bp overlap
IKZF1 1 dataset
Motif ES_0h ES_0h-IKZF1_MA1508.2 8 bp overlap
ISX 1 dataset
Motif ES_0h ES_0h-ISX_MA0654.2 6 bp overlap
Ikzf3 1 dataset
Motif ES_0h ES_0h-Ikzf3_MA1992.2 9 bp overlap
LBX1 1 dataset
Motif ES_0h ES_0h-LBX1_MA0618.2 7 bp overlap
LHX5 1 dataset
Motif ES_0h ES_0h-LHX5_MA1519.2 7 bp overlap
LHX6 1 dataset
Motif ES_0h ES_0h-LHX6_MA0658.2 8 bp overlap
LHX9 1 dataset
Motif ES_0h ES_0h-LHX9_MA0701.3 7 bp overlap
LMX1A 1 dataset
Motif ES_0h ES_0h-LMX1A_MA0702.3 7 bp overlap
LMX1B 1 dataset
Motif ES_0h ES_0h-LMX1B_MA0703.3 8 bp overlap
Lhx1 1 dataset
Motif ES_0h ES_0h-Lhx1_MA1518.3 10 bp overlap
Lhx4 1 dataset
Motif ES_0h ES_0h-Lhx4_MA0704.2 6 bp overlap
Lhx8 1 dataset
Motif ES_0h ES_0h-Lhx8_MA0705.2 6 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 191 bp overlap
MEIS1 1 dataset
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MEOX1 1 dataset
Motif ES_0h ES_0h-MEOX1_MA0661.2 7 bp overlap
MEOX2 1 dataset
Motif ES_0h ES_0h-MEOX2_MA0706.2 7 bp overlap
MIXL1 1 dataset
Motif ES_0h ES_0h-MIXL1_MA0662.2 6 bp overlap
MNX1 1 dataset
Motif ES_0h ES_0h-MNX1_MA0707.3 6 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 143 bp overlap
NANOG 8 datasets
ChIP GM23338 ENCFF065NZG 191 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 191 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 188 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 117 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 191 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 191 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 148 bp overlap
ChIP hESC GSE18292.NANOG.hESC 97 bp overlap
NKX6-1 1 dataset
Motif ES_0h ES_0h-NKX6-1_MA0674.2 7 bp overlap
NKX6-2 1 dataset
Motif ES_0h ES_0h-NKX6-2_MA0675.2 6 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 147 bp overlap
NOTO 1 dataset
Motif ES_0h ES_0h-NOTO_MA0710.2 7 bp overlap
PAX4 1 dataset
Motif ES_0h ES_0h-PAX4_MA0068.2 8 bp overlap
PDX1 1 dataset
Motif ES_0h ES_0h-PDX1_MA0132.3 6 bp overlap
POLR2A 3 datasets
ChIP GM23338 ENCFF450WCS 191 bp overlap
ChIP H1 ENCFF566JSR 191 bp overlap
ChIP H1 ENCFF833NJP 191 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 144 bp overlap
POU6F1 1 dataset
Motif ES_0h ES_0h-POU6F1_MA0628.2 6 bp overlap
POU6F2 1 dataset
Motif ES_0h ES_0h-POU6F2_MA0793.2 9 bp overlap
PRDM14 1 dataset
ChIP hESC GSE22767.PRDM14.hESC 145 bp overlap
PRRX1 1 dataset
Motif ES_0h ES_0h-PRRX1_MA0716.2 6 bp overlap
PRRX2 1 dataset
Motif ES_0h ES_0h-PRRX2_MA0075.4 7 bp overlap
RAX2 1 dataset
Motif ES_0h ES_0h-RAX2_MA0717.2 6 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 161 bp overlap
SETDB1 3 datasets
ChIP HEK293 ENCFF676PLV 191 bp overlap
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 133 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 133 bp overlap
SHOX 1 dataset
Motif ES_0h ES_0h-SHOX_MA0630.2 6 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 142 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 178 bp overlap
SMARCA4 1 dataset
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 191 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 191 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 191 bp overlap
SPIB 1 dataset
Motif ES_0h ES_0h-SPIB_MA0081.3 13 bp overlap
SRF 2 datasets
ChIP H1 ENCFF036PEF 153 bp overlap
ChIP WA01 ENCSR000BIV.SRF.WA01 149 bp overlap
STAT3 1 dataset
ChIP SU-DHL-2 GSE50723.STAT3.SU-DHL-2 101 bp overlap
Shox2 1 dataset
Motif ES_0h ES_0h-Shox2_MA0720.2 6 bp overlap
Spi1 1 dataset
Motif ES_0h ES_0h-Spi1_MA0080.7 13 bp overlap
TAF1 3 datasets
ChIP H1 ENCFF478SZO 191 bp overlap
ChIP H1 ENCFF478SZO 116 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 191 bp overlap
TAF7 2 datasets
ChIP H1 ENCFF061XZZ 191 bp overlap
ChIP WA01 ENCSR000BLU.TAF7.WA01 152 bp overlap
TBP 5 datasets
ChIP H1 ENCFF859IIO 191 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 177 bp overlap
ChIP hESC GSE122298.TBP.hESC 182 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 162 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 162 bp overlap
TLX2 1 dataset
Motif ES_0h ES_0h-TLX2_MA1577.2 6 bp overlap
TRIM28 2 datasets
ChIP K562 ENCFF671NCI 179 bp overlap
ChIP K562 ENCFF671NCI 191 bp overlap
UNCX 1 dataset
Motif ES_0h ES_0h-UNCX_MA0721.2 6 bp overlap
VAX1 1 dataset
Motif ES_0h ES_0h-VAX1_MA0722.2 7 bp overlap
VAX2 1 dataset
Motif ES_0h ES_0h-VAX2_MA0723.3 6 bp overlap
VSX1 1 dataset
Motif ES_0h ES_0h-VSX1_MA0725.2 7 bp overlap
VSX2 1 dataset
Motif ES_0h ES_0h-VSX2_MA0726.2 7 bp overlap
ZBTB43 1 dataset
ChIP WTC11 ENCFF058JUB 191 bp overlap
ZNF121 2 datasets
ChIP HEK293 ENCFF839FUF 184 bp overlap
ChIP WTC11 ENCFF291API 173 bp overlap
ZNF175 1 dataset
Motif ES_0h ES_0h-ZNF175_MA2332.1 9 bp overlap
ZNF610 2 datasets
ChIP HEK293 ENCFF778UKJ 191 bp overlap
ChIP HEK293 ENCSR691TXI.ZNF610.HEK293 191 bp overlap
mix-a 1 dataset
Motif ES_0h ES_0h-mix-a_MA0621.2 7 bp overlap