chr12 : 85,518,959 – 85,519,519
560 bp 90 TFs 0 linked genes
This 560 bp open chromatin element has no linked target genes and is bound by 90 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:85,513,959 – 85,524,519
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
90 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 143 bp overlap
ATF2 4 datasets
Motif DE_12h DE_12h-ATF2_MA1632.2 10 bp overlap
Motif DE_48h DE_48h-ATF2_MA1632.2 10 bp overlap
Motif DE_60h DE_60h-ATF2_MA1632.2 10 bp overlap
ChIP Hep-G2 ENCSR047BUZ.ATF2.Hep-G2 329 bp overlap
ATF3 3 datasets
Motif DE_12h DE_12h-ATF3_MA0605.3 10 bp overlap
Motif DE_48h DE_48h-ATF3_MA0605.3 10 bp overlap
Motif DE_60h DE_60h-ATF3_MA0605.3 10 bp overlap
ATF7 3 datasets
Motif DE_12h DE_12h-ATF7_MA0834.2 10 bp overlap
Motif DE_48h DE_48h-ATF7_MA0834.2 10 bp overlap
Motif DE_60h DE_60h-ATF7_MA0834.2 10 bp overlap
Ahr::Arnt 3 datasets
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_48h DE_48h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_60h DE_60h-AhrArnt_MA0006.2 5 bp overlap
CDX1 2 datasets
Motif DE_12h DE_12h-CDX1_MA0878.3 10 bp overlap
Motif DE_60h DE_60h-CDX1_MA0878.3 10 bp overlap
CREB1 6 datasets
Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap
Motif DE_48h DE_48h-CREB1_MA0018.5 8 bp overlap
Motif DE_60h DE_60h-CREB1_MA0018.5 8 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 144 bp overlap
ChIP Hep-G2 ENCSR112ALD.CREB1.Hep-G2 194 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 146 bp overlap
CREM 3 datasets
Motif DE_12h DE_12h-CREM_MA0609.3 10 bp overlap
Motif DE_48h DE_48h-CREM_MA0609.3 10 bp overlap
Motif DE_60h DE_60h-CREM_MA0609.3 10 bp overlap
Creb5 3 datasets
Motif DE_12h DE_12h-Creb5_MA0840.2 10 bp overlap
Motif DE_48h DE_48h-Creb5_MA0840.2 10 bp overlap
Motif DE_60h DE_60h-Creb5_MA0840.2 10 bp overlap
ERF::FOXO1 1 dataset
Motif DE_60h DE_60h-ERFFOXO1_MA1936.2 12 bp overlap
EWSR1-FLI1 1 dataset
Motif DE_60h DE_60h-EWSR1-FLI1_MA0149.1 18 bp overlap
Elf5 1 dataset
Motif DE_60h DE_60h-Elf5_MA0136.4 8 bp overlap
FIGLA 3 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
FOS 3 datasets
Motif DE_12h DE_12h-FOS_MA1951.2 13 bp overlap
Motif DE_48h DE_48h-FOS_MA1951.2 13 bp overlap
Motif DE_60h DE_60h-FOS_MA1951.2 13 bp overlap
FOS::JUN 3 datasets
Motif DE_12h DE_12h-FOSJUN_MA1126.2 10 bp overlap
Motif DE_48h DE_48h-FOSJUN_MA1126.2 10 bp overlap
Motif DE_60h DE_60h-FOSJUN_MA1126.2 10 bp overlap
FOSB::JUN 3 datasets
Motif DE_12h DE_12h-FOSBJUN_MA1127.1 11 bp overlap
Motif DE_48h DE_48h-FOSBJUN_MA1127.1 11 bp overlap
Motif DE_60h DE_60h-FOSBJUN_MA1127.1 11 bp overlap
FOSB::JUNB 3 datasets
Motif DE_12h DE_12h-FOSBJUNB_MA1136.1 10 bp overlap
Motif DE_48h DE_48h-FOSBJUNB_MA1136.1 10 bp overlap
Motif DE_60h DE_60h-FOSBJUNB_MA1136.1 10 bp overlap
FOSL1::JUN 3 datasets
Motif DE_12h DE_12h-FOSL1JUN_MA1129.1 10 bp overlap
Motif DE_48h DE_48h-FOSL1JUN_MA1129.1 10 bp overlap
Motif DE_60h DE_60h-FOSL1JUN_MA1129.1 10 bp overlap
FOSL1::JUND 2 datasets
Motif DE_12h DE_12h-FOSL1JUND_MA1143.2 9 bp overlap
Motif DE_60h DE_60h-FOSL1JUND_MA1143.2 9 bp overlap
FOSL2::JUN 3 datasets
Motif DE_12h DE_12h-FOSL2JUN_MA1131.2 10 bp overlap
Motif DE_48h DE_48h-FOSL2JUN_MA1131.2 10 bp overlap
Motif DE_60h DE_60h-FOSL2JUN_MA1131.2 10 bp overlap
FOSL2::JUNB 3 datasets
Motif DE_12h DE_12h-FOSL2JUNB_MA1139.2 10 bp overlap
Motif DE_48h DE_48h-FOSL2JUNB_MA1139.2 10 bp overlap
Motif DE_60h DE_60h-FOSL2JUNB_MA1139.2 10 bp overlap
FOSL2::JUND 3 datasets
Motif DE_12h DE_12h-FOSL2JUND_MA1145.2 10 bp overlap
Motif DE_48h DE_48h-FOSL2JUND_MA1145.2 10 bp overlap
Motif DE_60h DE_60h-FOSL2JUND_MA1145.2 10 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 560 bp overlap
ChIP DE DE-FOXA2-2 560 bp overlap
FOXD2 1 dataset
Motif DE_60h DE_60h-FOXD2_MA0847.4 11 bp overlap
FOXE1 1 dataset
Motif DE_60h DE_60h-FOXE1_MA1487.3 12 bp overlap
FOXH1 1 dataset
Motif DE_60h DE_60h-FOXH1_MA0479.2 8 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 560 bp overlap
ChIP DE DE-GATA4-2 560 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 456 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 472 bp overlap
GATA6 9 datasets
ChIP AGS GSE51936.GATA6.AGS 79 bp overlap
ChIP DE DE-GATA6-1 532 bp overlap
ChIP DE DE-GATA6-2 560 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 419 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 343 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 560 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 363 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 427 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 488 bp overlap
HOXB4 2 datasets
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
Motif DE_60h DE_60h-HOXB4_MA1499.2 6 bp overlap
HOXC4 2 datasets
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
Motif DE_60h DE_60h-HOXC4_MA1504.2 6 bp overlap
HOXD3 2 datasets
Motif DE_12h DE_12h-HOXD3_MA0912.2 8 bp overlap
Motif DE_60h DE_60h-HOXD3_MA0912.2 8 bp overlap
HOXD4 2 datasets
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
Motif DE_60h DE_60h-HOXD4_MA1507.2 6 bp overlap
Hmga1 2 datasets
Motif DE_12h DE_12h-Hmga1_MA2124.1 8 bp overlap
Motif DE_60h DE_60h-Hmga1_MA2124.1 8 bp overlap
Hmx1 3 datasets
Motif DE_12h DE_12h-Hmx1_MA0896.2 9 bp overlap
Motif DE_48h DE_48h-Hmx1_MA0896.2 9 bp overlap
Motif DE_60h DE_60h-Hmx1_MA0896.2 9 bp overlap
Hmx2 3 datasets
Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap
Motif DE_48h DE_48h-Hmx2_MA0897.2 15 bp overlap
Motif DE_60h DE_60h-Hmx2_MA0897.2 15 bp overlap
Hmx3 3 datasets
Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap
Motif DE_48h DE_48h-Hmx3_MA0898.2 9 bp overlap
Motif DE_60h DE_60h-Hmx3_MA0898.2 9 bp overlap
IKZF2 1 dataset
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
IRF3 1 dataset
Motif DE_60h DE_60h-IRF3_MA1418.2 17 bp overlap
JDP2 3 datasets
Motif DE_12h DE_12h-JDP2_MA0656.2 10 bp overlap
Motif DE_48h DE_48h-JDP2_MA0656.2 10 bp overlap
Motif DE_60h DE_60h-JDP2_MA0656.2 10 bp overlap
JUN 9 datasets
Motif DE_12h DE_12h-JUN_MA0488.2 10 bp overlap
Motif DE_48h DE_48h-JUN_MA0488.2 10 bp overlap
Motif DE_60h DE_60h-JUN_MA0488.2 10 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 424 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 315 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 411 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 439 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 445 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 451 bp overlap
JUN::JUNB 3 datasets
Motif DE_12h DE_12h-JUNJUNB_MA1133.2 11 bp overlap
Motif DE_48h DE_48h-JUNJUNB_MA1133.2 11 bp overlap
Motif DE_60h DE_60h-JUNJUNB_MA1133.2 11 bp overlap
JUNB 3 datasets
Motif DE_12h DE_12h-JUNB_MA1140.3 11 bp overlap
Motif DE_48h DE_48h-JUNB_MA1140.3 11 bp overlap
Motif DE_60h DE_60h-JUNB_MA1140.3 11 bp overlap
JUND 3 datasets
Motif DE_12h DE_12h-JUND_MA0492.2 11 bp overlap
Motif DE_48h DE_48h-JUND_MA0492.2 11 bp overlap
Motif DE_60h DE_60h-JUND_MA0492.2 11 bp overlap
KLF17 1 dataset
Motif DE_60h DE_60h-KLF17_MA1514.2 14 bp overlap
LIN54 3 datasets
Motif DE_12h DE_12h-LIN54_MA0619.2 7 bp overlap
Motif DE_48h DE_48h-LIN54_MA0619.2 7 bp overlap
Motif DE_60h DE_60h-LIN54_MA0619.2 7 bp overlap
MEIS1 3 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MSANTD3 1 dataset
Motif DE_12h DE_12h-MSANTD3_MA1523.2 7 bp overlap
NANOG 6 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 110 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 225 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 214 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 236 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 408 bp overlap
ChIP hESC GSE18292.NANOG.hESC 112 bp overlap
NFYB 1 dataset
Motif DE_12h DE_12h-NFYB_MA0502.3 9 bp overlap
NKX2-2 1 dataset
Motif DE_12h DE_12h-NKX2-2_MA1645.2 8 bp overlap
NR2C1 3 datasets
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
Motif DE_48h DE_48h-NR2C1_MA1535.2 6 bp overlap
Motif DE_60h DE_60h-NR2C1_MA1535.2 6 bp overlap
NR2C2 3 datasets
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
Motif DE_48h DE_48h-NR2C2_MA1536.2 6 bp overlap
Motif DE_60h DE_60h-NR2C2_MA1536.2 6 bp overlap
NR2F1 3 datasets
Motif DE_12h DE_12h-NR2F1_MA0017.3 12 bp overlap
Motif DE_48h DE_48h-NR2F1_MA0017.3 12 bp overlap
Motif DE_60h DE_60h-NR2F1_MA0017.3 12 bp overlap
Nr1H2 3 datasets
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_48h DE_48h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_60h DE_60h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 3 datasets
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_48h DE_48h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_60h DE_60h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 3 datasets
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_48h DE_48h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_60h DE_60h-Nr1h3_MA2337.1 6 bp overlap
POU5F1 3 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 179 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 120 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 379 bp overlap
POU6F1 2 datasets
Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap
Motif DE_60h DE_60h-POU6F1_MA1549.2 7 bp overlap
RAD21 1 dataset
ChIP HAP1 GSE152721.RAD21.HAP1 139 bp overlap
RARA::RXRA 3 datasets
Motif DE_12h DE_12h-RARARXRA_MA0159.1 17 bp overlap
Motif DE_48h DE_48h-RARARXRA_MA0159.1 17 bp overlap
Motif DE_60h DE_60h-RARARXRA_MA0159.1 17 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 185 bp overlap
SMAD2-3 4 datasets
ChIP HGrC1_EV GSE138496.SMAD2-3.HGrC1_EV 100 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 560 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 398 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 443 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 426 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 336 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 396 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 560 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 557 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 163 bp overlap
SMARCA4 3 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 560 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 178 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 357 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 180 bp overlap
SMARCC1 3 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 128 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 175 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 359 bp overlap
SNAI1 3 datasets
Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap
Motif DE_48h DE_48h-SNAI1_MA1558.2 7 bp overlap
Motif DE_60h DE_60h-SNAI1_MA1558.2 7 bp overlap
SOX10 3 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
SOX12 1 dataset
Motif DE_60h DE_60h-SOX12_MA1561.2 10 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 438 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 553 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 130 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 198 bp overlap
Sox6 3 datasets
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Motif DE_48h DE_48h-Sox6_MA0515.1 10 bp overlap
Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap
TCF12 3 datasets
Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap
Motif DE_48h DE_48h-TCF12_MA1648.2 7 bp overlap
Motif DE_60h DE_60h-TCF12_MA1648.2 7 bp overlap
TCF3 3 datasets
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
Motif DE_48h DE_48h-TCF3_MA0522.4 7 bp overlap
Motif DE_60h DE_60h-TCF3_MA0522.4 7 bp overlap
TEAD4 1 dataset
ChIP T-47D_Veh GSE125594.TEAD4.T-47D_Veh 139 bp overlap
ZBTB21 1 dataset
ChIP HEK293 ENCSR321MSF.ZBTB21.HEK293 214 bp overlap
ZBTB32 1 dataset
Motif DE_12h DE_12h-ZBTB32_MA1580.1 10 bp overlap
ZEB1 3 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
ZFP42 2 datasets
Motif DE_12h DE_12h-ZFP42_MA1651.2 13 bp overlap
Motif DE_60h DE_60h-ZFP42_MA1651.2 13 bp overlap
ZNF184 1 dataset
Motif DE_60h DE_60h-ZNF184_MA2120.1 13 bp overlap
ZNF354C 1 dataset
Motif DE_60h DE_60h-ZNF354C_MA0130.1 6 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 232 bp overlap
ZNF582 3 datasets
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
Motif DE_48h DE_48h-ZNF582_MA1983.2 19 bp overlap
Motif DE_60h DE_60h-ZNF582_MA1983.2 19 bp overlap
ZNF629 1 dataset
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 257 bp overlap
ZNF660 2 datasets
ChIP HEK293 ENCFF282RUS 421 bp overlap
ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 221 bp overlap
ZNF677 1 dataset
Motif DE_60h DE_60h-ZNF677_MA2101.1 12 bp overlap
ZNF701 2 datasets
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
Motif DE_60h DE_60h-ZNF701_MA1987.2 17 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
Huangfu Lab · Publications · Resources · Contact