chr12 : 79,534,249 79,535,297
1,048 bp 67 TFs 1 linked gene
This 1.0 kb open chromatin element is linked to ENSG00000257474 and is bound by 67 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
ENSG00000257474 4.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:79,529,249 – 79,540,297
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
67 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_2815_T GSE130408.AR.prostate_2815_T 60 bp overlap
ARID1A 5 datasets
ChIP MCF-7 GSE123284.ARID1A.MCF-7 206 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 273 bp overlap
ChIP MCF-7_DCDT GSE123284.ARID1A.MCF-7_DCDT 182 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 255 bp overlap
ChIP MCF-7_JQ1 GSE123284.ARID1A.MCF-7_JQ1 204 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 210 bp overlap
BRD4 1 dataset
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 220 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 55 bp overlap
CEBPB 1 dataset
ChIP MCF-7 ENCFF772ZTQ 92 bp overlap
CLOCK 1 dataset
ChIP BA10_2 GSE96659.CLOCK.BA10_2 153 bp overlap
CRX 1 dataset
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 316 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 289 bp overlap
CTBP1 1 dataset
ChIP MCF-7 ENCSR636EYA.CTBP1.MCF-7 272 bp overlap
CTBP2 1 dataset
ChIP MCF-7 GSE107013.CTBP2.MCF-7 85 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 251 bp overlap
DPF2 2 datasets
ChIP MCF-7 ENCFF712EXQ 195 bp overlap
ChIP MCF-7 ENCSR234VCE.DPF2.MCF-7 272 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 258 bp overlap
ESR1 4 datasets
ChIP MCF-7 ENCFF004AKH 249 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 91 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 104 bp overlap
ChIP breast_tumor_Male_7 GSE104399.ESR1.breast_tumor_Male_7 137 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 251 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 208 bp overlap
FOS 2 datasets
ChIP MCF-7 ENCFF282FWZ 193 bp overlap
ChIP MCF-7 ENCFF282FWZ 396 bp overlap
FOXA1 34 datasets
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 61 bp overlap
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 78 bp overlap
ChIP MCF-7 ENCFF465LTH 81 bp overlap
ChIP MCF-7 GSE140185.FOXA1.MCF-7 81 bp overlap
ChIP MCF-7 GSE81714.FOXA1.MCF-7 176 bp overlap
ChIP MCF-7 ENCSR126YEB.FOXA1.MCF-7 151 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 72 bp overlap
ChIP MCF-7 GSE72249.FOXA1.MCF-7 80 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 110 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 65 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 53 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 100 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 51 bp overlap
ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 68 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 103 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 85 bp overlap
ChIP MCF-7_JC4696 GSE126004.FOXA1.MCF-7_JC4696 95 bp overlap
ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 77 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 159 bp overlap
ChIP MCF-7_vehicle_ab1 GSE112969.FOXA1.MCF-7_vehicle_ab1 117 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 129 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 110 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 81 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 55 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 65 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 77 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 122 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 54 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 69 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 53 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 88 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 76 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 176 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 145 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 655 bp overlap
ChIP DE DE-FOXA2-2 724 bp overlap
GABPA 1 dataset
ChIP VCaP GSE49091.GABPA.VCaP 176 bp overlap
GATA3 2 datasets
ChIP T-47D ENCSR000BMX.GATA3.T-47D 73 bp overlap
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 176 bp overlap
GATA4 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 185 bp overlap
ChIP DE DE-GATA4-1 897 bp overlap
ChIP DE DE-GATA4-2 992 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 522 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 827 bp overlap
ChIP DE DE-GATA6-2 1007 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 692 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 470 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 526 bp overlap
GATAD2B 2 datasets
ChIP MCF-7 ENCFF718AXM 188 bp overlap
ChIP MCF-7 ENCSR979FQP.GATAD2B.MCF-7 180 bp overlap
GRHL1 2 datasets
ChIP MCF-7 GSE140185.GRHL1.MCF-7 300 bp overlap
ChIP MCF-7_ARID1A-KO GSE140185.GRHL1.MCF-7_ARID1A-KO 126 bp overlap
GRHL2 9 datasets
ChIP HBE GSE46194.GRHL2.HBE 151 bp overlap
ChIP LNCaP GSE80256.GRHL2.LNCaP 165 bp overlap
ChIP MCF-7 GSE109820.GRHL2.MCF-7 221 bp overlap
ChIP MCF-7 GSE99680.GRHL2.MCF-7 123 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 289 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 305 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 241 bp overlap
ChIP PEO1 GSE71018.GRHL2.PEO1 107 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 201 bp overlap
HOXB8 2 datasets
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 399 bp overlap
ChIP PANC-1 GSE119930.HOXB8.PANC-1 344 bp overlap
ISL1 1 dataset
ChIP SK-N-SH ENCFF285GEQ 485 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 284 bp overlap
KLF17 1 dataset
Motif DE_60h DE_60h-KLF17_MA1514.2 14 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 204 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 110 bp overlap
MAX 2 datasets
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 70 bp overlap
ChIP MCF-7 ENCSR000BUL.MAX.MCF-7 90 bp overlap
NCAPH2 1 dataset
ChIP RMG-I_ARID1A-KO GSE120058.NCAPH2.RMG-I_ARID1A-KO 725 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 469 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 467 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 57 bp overlap
ONECUT2 1 dataset
ChIP PC-3_normoxia GSE106305.ONECUT2.PC-3_normoxia 299 bp overlap
OTX1 1 dataset
ChIP MCF-7 ENCFF645GYL 226 bp overlap
OTX2 1 dataset
ChIP retina_pigment GSE60024.OTX2.retina_pigment 159 bp overlap
OVOL1 2 datasets
ChIP MCF-7 ENCFF537GWI 260 bp overlap
ChIP MCF-7 ENCSR829WBA.OVOL1.MCF-7 223 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 118 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 269 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 260 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 365 bp overlap
Prdm15 1 dataset
Motif DE_60h DE_60h-Prdm15_MA1616.2 11 bp overlap
RAD21 1 dataset
ChIP LoVo_PHASEM GSE51290.RAD21.LoVo_PHASEM 232 bp overlap
REL 1 dataset
Motif DE_60h DE_60h-REL_MA0101.1 10 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 557 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 304 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 428 bp overlap
SMARCA4 3 datasets
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 142 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.SMARCA4.MCF-7_ARID1A-KO_4-OHT_clone14 215 bp overlap
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 175 bp overlap
SMARCB1 6 datasets
ChIP MCF-7 GSE123284.SMARCB1.MCF-7 154 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 220 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 161 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.SMARCB1.MCF-7_Fulvestrant 208 bp overlap
ChIP MCF-7_JQ1 GSE123284.SMARCB1.MCF-7_JQ1 172 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 220 bp overlap
SMARCD3 2 datasets
ChIP MCF-7 GSE124225.SMARCD3.MCF-7 160 bp overlap
ChIP MCF-7_KO GSE124225.SMARCD3.MCF-7_KO 118 bp overlap
SMARCE1 2 datasets
ChIP MCF-7 ENCFF890MHF 63 bp overlap
ChIP MCF-7 ENCSR431TLD.SMARCE1.MCF-7 78 bp overlap
SPDEF 1 dataset
ChIP MCF-7 ENCFF827PZY 213 bp overlap
STAT3 3 datasets
ChIP BT-474 GSE152203.STAT3.BT-474 92 bp overlap
ChIP MCF-7 GSE152203.STAT3.MCF-7 156 bp overlap
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 218 bp overlap
TEAD4 4 datasets
ChIP Ishikawa ENCFF772OTG 151 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 135 bp overlap
ChIP MCF-7_BLRP_WT_E2 GSE125594.TEAD4.MCF-7_BLRP_WT_E2 191 bp overlap
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 125 bp overlap
TRPS1 1 dataset
ChIP T-47D GSE107013.TRPS1.T-47D 51 bp overlap
TSC22D1 1 dataset
ChIP MCF-7 ENCFF552PAC 195 bp overlap
YY1 1 dataset
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 57 bp overlap
ZNF143 2 datasets
ChIP MCF-7 GSE76454.ZNF143.MCF-7 314 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 276 bp overlap
ZNF24 2 datasets
ChIP MCF-7 ENCFF861XIL 139 bp overlap
ChIP MCF-7 ENCSR503VTG.ZNF24.MCF-7 150 bp overlap
ZNF44 1 dataset
ChIP HEK293T GSE78099.ZNF44.HEK293T 157 bp overlap
ZNF592 3 datasets
ChIP MCF-7 ENCFF161LTO 260 bp overlap
ChIP MCF-7 ENCFF315RIM 284 bp overlap
ChIP MCF-7 ENCSR701AQS.ZNF592.MCF-7 265 bp overlap
ZNF687 2 datasets
ChIP MCF-7 ENCFF440BFX 239 bp overlap
ChIP MCF-7 ENCSR899BKM.ZNF687.MCF-7 253 bp overlap
Zic2 1 dataset
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap