chr12 : 62,751,257 62,751,527
270 bp 52 TFs 0 linked genes
This 270 bp open chromatin element has no linked target genes and is bound by 52 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:62,746,257 – 62,756,527
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
52 transcription factors
Source
Cell type
AR 1 dataset
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 270 bp overlap
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 210 bp overlap
ATF3 1 dataset
ChIP A-549 ENCSR000BPS.ATF3.A-549 54 bp overlap
BCL3 2 datasets
ChIP A-549 ENCSR000BQH.BCL3.A-549 89 bp overlap
ChIP A549 ENCFF214WKT 153 bp overlap
BRD4 4 datasets
ChIP HT29 GSE73319.BRD4.HT29 270 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 270 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 270 bp overlap
ChIP SUM229PE_pos_30nMtrametinib_24h GSE87418.BRD4.SUM229PE_pos_30nMtrametinib_24h 260 bp overlap
CDX2 1 dataset
ChIP LS180_125 GSE31939.CDX2.LS180_125 170 bp overlap
CEBPB 3 datasets
ChIP A-549 ENCSR000BUB.CEBPB.A-549 73 bp overlap
ChIP A549 ENCFF781RLJ 111 bp overlap
ChIP HCT116 ENCFF097OLY 146 bp overlap
CEBPG 1 dataset
ChIP MCF-7 ENCFF155HZI 217 bp overlap
CREB1 2 datasets
ChIP A-549 ENCSR000BRC.CREB1.A-549 205 bp overlap
ChIP A-549 ENCSR000BRB.CREB1.A-549 135 bp overlap
CREBBP 2 datasets
ChIP PC-3 GSE147455.CREBBP.PC-3 232 bp overlap
ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 173 bp overlap
CTNNB1 1 dataset
ChIP LS180_125 GSE31939.CTNNB1.LS180_125 54 bp overlap
DUX4 1 dataset
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 270 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 268 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 270 bp overlap
EP300 4 datasets
ChIP A-549 ENCSR000BPW.EP300.A-549 270 bp overlap
ChIP A549 ENCFF476KCM 249 bp overlap
ChIP A549 ENCFF960ZEI 181 bp overlap
ChIP A549 ENCFF960ZEI 270 bp overlap
FOSL2 2 datasets
ChIP A-549 ENCSR000BQO.FOSL2.A-549 170 bp overlap
ChIP A-549 ENCSR448TVS.FOSL2.A-549 90 bp overlap
FOXA1 16 datasets
ChIP A-549 ENCSR000BPX.FOXA1.A-549 204 bp overlap
ChIP A-549 ENCSR000BRD.FOXA1.A-549 189 bp overlap
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 231 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 192 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 260 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 270 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 83 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 113 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 75 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 239 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 111 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 270 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 63 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 70 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 134 bp overlap
ChIP prostate-cancer_PDX_136 GSE130408.FOXA1.prostate-cancer_PDX_136 112 bp overlap
FOXA2 4 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 133 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 207 bp overlap
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 104 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 224 bp overlap
GATA3 2 datasets
ChIP A-549 ENCSR000BTI.GATA3.A-549 216 bp overlap
ChIP A549 ENCFF226FVV 68 bp overlap
HDAC1 1 dataset
ChIP PC-3_GDC-resist GSE147455.HDAC1.PC-3_GDC-resist 170 bp overlap
HDAC2 2 datasets
ChIP PC-3 GSE147455.HDAC2.PC-3 203 bp overlap
ChIP PC-3_GDC-resist GSE147455.HDAC2.PC-3_GDC-resist 158 bp overlap
HNF4A 1 dataset
ChIP GP5D GSE51234.HNF4A.GP5D 200 bp overlap
HOXB13 2 datasets
ChIP G-401 GSE65381.HOXB13.G-401 118 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 140 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 208 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 66 bp overlap
JUN 1 dataset
ChIP A549 ENCFF846DUV 270 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 257 bp overlap
KLF5 2 datasets
ChIP GP5D GSE51234.KLF5.GP5D 270 bp overlap
ChIP KATO-III GSE51705.KLF5.KATO-III 56 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 242 bp overlap
LIN54 1 dataset
Motif DE_12h DE_12h-LIN54_MA0619.2 7 bp overlap
MED1 1 dataset
ChIP A-549 GSE76893.MED1.A-549 207 bp overlap
MYC 2 datasets
ChIP A-549 GSE112188.MYC.A-549 53 bp overlap
ChIP GP5D GSE51234.MYC.GP5D 270 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 209 bp overlap
NFE2L2 1 dataset
ChIP A-549 GSE113497.NFE2L2.A-549 109 bp overlap
NIPBL 2 datasets
ChIP A-549 GSE76893.NIPBL.A-549 165 bp overlap
ChIP GP5D GSE51234.NIPBL.GP5D 270 bp overlap
NR3C1 3 datasets
ChIP A-549 ENCSR000BJR.NR3C1.A-549 167 bp overlap
ChIP A-549 ENCSR000BHG.NR3C1.A-549 231 bp overlap
ChIP A-549 ENCSR000BHF.NR3C1.A-549 244 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 270 bp overlap
RAD21 1 dataset
ChIP GP5D GSE51234.RAD21.GP5D 270 bp overlap
REST 1 dataset
ChIP A-549 ENCSR000BQP.REST.A-549 255 bp overlap
SMAD3 2 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 181 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 157 bp overlap
SMARCA4 11 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 84 bp overlap
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 69 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 132 bp overlap
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 106 bp overlap
ChIP A-549_AG15680 GSE132290.SMARCA4.A-549_AG15680 75 bp overlap
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 148 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 270 bp overlap
ChIP A-549_AG15689 GSE132290.SMARCA4.A-549_AG15689 75 bp overlap
ChIP A-549_AG15723 GSE132290.SMARCA4.A-549_AG15723 171 bp overlap
ChIP A-549_AG15724 GSE132290.SMARCA4.A-549_AG15724 197 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 209 bp overlap
SMARCB1 1 dataset
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 86 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 191 bp overlap
SP1 1 dataset
ChIP A-549 ENCSR000BPE.SP1.A-549 263 bp overlap
STAT3 2 datasets
ChIP A139 GSE85579.STAT3.A139 113 bp overlap
ChIP HCC1937 GSE152203.STAT3.HCC1937 148 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 137 bp overlap
TCF12 1 dataset
ChIP A-549 ENCSR000BQQ.TCF12.A-549 270 bp overlap
TFAP2C 1 dataset
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 247 bp overlap
USF1 1 dataset
ChIP A-549 ENCSR000BJB.USF1.A-549 81 bp overlap
Yy1 1 dataset
Motif DE_12h DE_12h-Yy1_MA0095.4 8 bp overlap
ZNF532 1 dataset
ChIP NMC24335 GSE96775.ZNF532.NMC24335 266 bp overlap
ZNF766 1 dataset
Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap