chr1 : 210,369,535 – 210,369,689

154 bp 80 TFs 1 linked gene

This 154 bp open chromatin element is linked to RNU5A-8P and is bound by 80 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
RNU5A-8P		4.6 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

80 transcription factors

ARID1A 1 dataset

ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 154 bp overlap

ARNT2 1 dataset

Motif DE_12h DE_12h-ARNT2_MA1464.2 8 bp overlap

ARNT::HIF1A 1 dataset

Motif DE_12h DE_12h-ARNTHIF1A_MA0259.2 5 bp overlap

ASCL1 1 dataset

Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap

ATF2 1 dataset

ChIP WA01 ENCSR000BQU.ATF2.WA01 112 bp overlap

Arnt 1 dataset

Motif DE_12h DE_12h-Arnt_MA0004.1 6 bp overlap

Arntl 1 dataset

Motif DE_12h DE_12h-Arntl_MA0603.2 8 bp overlap

BRD4 1 dataset

ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 71 bp overlap

Bach1::Mafk 1 dataset

Motif DE_12h DE_12h-Bach1Mafk_MA0591.2 12 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF262VBH 130 bp overlap

E2F6 2 datasets

ChIP H1 ENCFF785DWK 154 bp overlap

ChIP WA01 ENCSR000BSI.E2F6.WA01 154 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 154 bp overlap

ESR1 7 datasets

ChIP T-47D GSE148277.ESR1.T-47D 154 bp overlap

ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 154 bp overlap

ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 154 bp overlap

ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 154 bp overlap

ChIP breast_tumor_Male_1 GSE104399.ESR1.breast_tumor_Male_1 154 bp overlap

ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 154 bp overlap

ChIP breast_tumor_Male_21 GSE104399.ESR1.breast_tumor_Male_21 151 bp overlap

ESR1_Y537C 1 dataset

ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 154 bp overlap

FIGLA 1 dataset

Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap

FLI1 2 datasets

ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 141 bp overlap

ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 105 bp overlap

FOXA1 5 datasets

ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 139 bp overlap

ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 154 bp overlap

ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 51 bp overlap

ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 108 bp overlap

ChIP breast_tumor_Male_1 GSE104399.FOXA1.breast_tumor_Male_1 65 bp overlap

FOXA2 1 dataset

ChIP DE DE-FOXA2-2 154 bp overlap

HES1 1 dataset

Motif DE_12h DE_12h-HES1_MA1099.3 8 bp overlap

HES2 1 dataset

Motif DE_12h DE_12h-HES2_MA0616.3 9 bp overlap

HES5 1 dataset

Motif DE_12h DE_12h-HES5_MA0821.2 10 bp overlap

HES7 1 dataset

Motif DE_12h DE_12h-HES7_MA0822.1 12 bp overlap

HEY1 1 dataset

Motif DE_12h DE_12h-HEY1_MA0823.1 10 bp overlap

HEY2 1 dataset

Motif DE_12h DE_12h-HEY2_MA0649.2 9 bp overlap

HIC1 2 datasets

ChIP HEK293 ENCFF252CFL 154 bp overlap

ChIP HEK293 ENCSR803GYT.HIC1.HEK293 154 bp overlap

HIF1A 1 dataset

Motif DE_12h DE_12h-HIF1A_MA1106.2 6 bp overlap

JUN 3 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 154 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 154 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 154 bp overlap

MAF 1 dataset

Motif DE_12h DE_12h-MAF_MA1520.2 13 bp overlap

MAFA 1 dataset

Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap

MAX 7 datasets

Motif DE_12h DE_12h-MAX_MA0058.4 6 bp overlap

ChIP H1 ENCFF601FOM 154 bp overlap

ChIP H1 ENCFF914VQY 154 bp overlap

ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 154 bp overlap

ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 154 bp overlap

ChIP WA01 ENCSR000EUP.MAX.WA01 154 bp overlap

ChIP WTC11 ENCFF223QFY 154 bp overlap

MAX::MYC 1 dataset

Motif DE_12h DE_12h-MAXMYC_MA0059.2 10 bp overlap

MED26 1 dataset

ChIP HEK293T GSE121024.MED26.HEK293T 81 bp overlap

MLX 1 dataset

Motif DE_12h DE_12h-MLX_MA0663.1 10 bp overlap

MNT 1 dataset

Motif DE_12h DE_12h-MNT_MA0825.2 6 bp overlap

MYC 2 datasets

Motif DE_12h DE_12h-MYC_MA0147.4 8 bp overlap

ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 154 bp overlap

MYCN 1 dataset

Motif DE_12h DE_12h-MYCN_MA0104.5 8 bp overlap

MYOD1 1 dataset

ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 109 bp overlap

Mafg 1 dataset

Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap

Mlxip 1 dataset

Motif DE_12h DE_12h-Mlxip_MA0622.2 6 bp overlap

NANOG 4 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 154 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 133 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 120 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 154 bp overlap

NEUROD1 3 datasets

ChIP D283-Med GSE92582.NEUROD1.D283-Med 129 bp overlap

ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 145 bp overlap

ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 133 bp overlap

NFIB 1 dataset

Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap

NFIC 1 dataset

Motif DE_12h DE_12h-NFIC_MA1527.2 15 bp overlap

NFIC::TLX1 1 dataset

Motif DE_12h DE_12h-NFICTLX1_MA0119.1 14 bp overlap

Npas2 1 dataset

Motif DE_12h DE_12h-Npas2_MA0626.2 8 bp overlap

OSR2 1 dataset

ChIP HEK293 ENCSR324LTM.OSR2.HEK293 154 bp overlap

POU5F1 2 datasets

ChIP HUES-8 GSE109524.POU5F1.HUES-8 154 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 127 bp overlap

Ptf1A 1 dataset

Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap

SALL3 1 dataset

ChIP hiPSC GSE104863.SALL3.hiPSC 97 bp overlap

SIN3A 1 dataset

ChIP WA01 ENCSR000EBO.SIN3A.WA01 131 bp overlap

SMARCA4 5 datasets

ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 154 bp overlap

ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 154 bp overlap

ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 154 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 154 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 68 bp overlap

SMARCB1 1 dataset

ChIP hiPSC GSE124903.SMARCB1.hiPSC 140 bp overlap

SMARCC1 4 datasets

ChIP TTC-1240 GSE124903.SMARCC1.TTC-1240 154 bp overlap

ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 154 bp overlap

ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 154 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 154 bp overlap

SNAI1 1 dataset

Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap

SNAI3 1 dataset

Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap

SOHLH2 1 dataset

Motif DE_12h DE_12h-SOHLH2_MA1560.2 8 bp overlap

SP1 1 dataset

ChIP WA01 ENCSR000BIR.SP1.WA01 116 bp overlap

T 1 dataset

ChIP H9_MESODERM GSE60606.T.H9_MESODERM 154 bp overlap

TBX5 2 datasets

ChIP G296S_4 GSE85628.TBX5.G296S_4 154 bp overlap

ChIP hiPSC GSE81585.TBX5.hiPSC 154 bp overlap

TCF12 1 dataset

Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap

TCF3 2 datasets

Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap

TCF4 1 dataset

Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap

TEAD1 1 dataset

ChIP HEK293_siE1A GSE130135.TEAD1.HEK293_siE1A 111 bp overlap

TEAD4 4 datasets

ChIP ESC S26-ESC-d0-TEAD4-exp1 154 bp overlap

ChIP H1 ENCFF778PAX 65 bp overlap

ChIP HEK293_siCtrl GSE130135.TEAD4.HEK293_siCtrl 112 bp overlap

ChIP HEK293_siE1A GSE130135.TEAD4.HEK293_siE1A 136 bp overlap

TFE3 1 dataset

Motif DE_12h DE_12h-TFE3_MA0831.3 10 bp overlap

TFEB 1 dataset

Motif DE_12h DE_12h-TFEB_MA0692.2 8 bp overlap

TFEC 1 dataset

Motif DE_12h DE_12h-TFEC_MA0871.3 8 bp overlap

USF1 3 datasets

ChIP H1 ENCFF090WVU 76 bp overlap

ChIP WA01 ENCSR000BIU.USF1.WA01 154 bp overlap

ChIP WTC11 ENCFF699QGS 154 bp overlap

USF2 1 dataset

ChIP WTC11 ENCFF139JAW 154 bp overlap

YY1AP1 1 dataset

ChIP HEK293_siCtrl GSE130135.YY1AP1.HEK293_siCtrl 112 bp overlap

ZEB1 1 dataset

Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap

ZIC1 1 dataset

Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap

ZIC2 1 dataset

ChIP HEK293 ENCFF033NQQ 154 bp overlap

ZIC4 1 dataset

Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap

ZIC5 1 dataset

Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap

ZNF652 1 dataset

Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap

ZNF664 2 datasets

ChIP HEK293 ENCFF343XSW 154 bp overlap

ChIP HEK293 ENCSR714LZQ.ZNF664.HEK293 154 bp overlap

Zic1::Zic2 1 dataset

Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap

Zic2 1 dataset

Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap

Zic3 1 dataset

Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap