chr1 : 209,888,562 209,889,538
976 bp 75 TFs 4 linked genes
This 976 bp open chromatin element is linked to 4 target genes and is bound by 75 transcription factors.
Linked Genes
4 genes
Link type
Gene Expression Dist. to TSS Distance Link type
SYT14 49.3 kb Distal Multiome
UTP25 60.9 kb Distal Multiome
IRF6 82.7 kb Distal Multiome
HHAT 440.0 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:209,883,562 – 209,894,538
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
75 transcription factors
Source
Cell type
ASCL1 2 datasets
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
Motif DE_24h DE_24h-ASCL1_MA1631.2 9 bp overlap
BRD4 1 dataset
ChIP COLO-741 GSE73319.BRD4.COLO-741 708 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 603 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 171 bp overlap
CTCF 10 datasets
ChIP 22Rv1 ENCFF466OXN 242 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
Motif DE_24h DE_24h-CTCF_MA0139.2 15 bp overlap
Motif DE_24h DE_24h-CTCF_MA1930.2 33 bp overlap
ChIP GM23338 ENCFF531QOI 213 bp overlap
ChIP GM23338 ENCFF772DML 67 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 90 bp overlap
ChIP endodermal cell ENCFF471YCZ 461 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 147 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 163 bp overlap
ChIP BLaER1 ENCFF031ISE 278 bp overlap
EBF3 1 dataset
Motif DE_12h DE_12h-EBF3_MA1637.2 9 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 299 bp overlap
ERG 2 datasets
ChIP AMLPZ12 GSE23730.ERG.AMLPZ12 203 bp overlap
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 385 bp overlap
ETV2::FIGLA 2 datasets
Motif DE_12h DE_12h-ETV2FIGLA_MA1941.2 13 bp overlap
Motif DE_24h DE_24h-ETV2FIGLA_MA1941.2 13 bp overlap
ETV5::FIGLA 2 datasets
Motif DE_12h DE_12h-ETV5FIGLA_MA1945.2 14 bp overlap
Motif DE_24h DE_24h-ETV5FIGLA_MA1945.2 14 bp overlap
EZH2_phosphoT487 2 datasets
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 397 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 236 bp overlap
Ebf2 1 dataset
Motif DE_12h DE_12h-Ebf2_MA1604.2 9 bp overlap
FIGLA 2 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
FOS 1 dataset
ChIP K-562 ENCSR000FAI.FOS.K-562 188 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 336 bp overlap
GLI3 2 datasets
Motif DE_12h DE_12h-GLI3_MA1491.3 15 bp overlap
Motif ES_0h ES_0h-GLI3_MA1491.3 15 bp overlap
GTF2A2 1 dataset
ChIP K562 ENCFF041WRN 170 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 252 bp overlap
KLF13 1 dataset
Motif ES_0h ES_0h-KLF13_MA0657.2 17 bp overlap
KLF7 1 dataset
Motif DE_12h DE_12h-KLF7_MA1959.2 8 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 163 bp overlap
MAFF 1 dataset
ChIP K562 ENCFF071YKK 198 bp overlap
MAFG 1 dataset
ChIP K562 ENCFF455EEO 202 bp overlap
MAFK 4 datasets
ChIP A549 ENCFF371EPR 130 bp overlap
ChIP HepG2 ENCFF743ZOF 204 bp overlap
ChIP HepG2 ENCFF767LDG 193 bp overlap
ChIP K562 ENCFF380WHM 193 bp overlap
MEIS2 1 dataset
ChIP K562 ENCFF320GSD 181 bp overlap
MTA3 1 dataset
ChIP K562 ENCFF289UFB 284 bp overlap
MYB 1 dataset
Motif ES_0h ES_0h-MYB_MA0100.4 6 bp overlap
NANOG 2 datasets
ChIP WA01 ERP004238.NANOG.WA01 349 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 181 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 310 bp overlap
NFATC3 1 dataset
ChIP K562 ENCFF078EKB 334 bp overlap
NFATC4 2 datasets
Motif DE_12h DE_12h-NFATC4_MA1525.3 9 bp overlap
Motif DE_24h DE_24h-NFATC4_MA1525.3 9 bp overlap
NFYA 3 datasets
ChIP K-562 ENCSR000EGR.NFYA.K-562 226 bp overlap
ChIP K562 ENCFF732HOX 296 bp overlap
ChIP K562 ENCFF732HOX 425 bp overlap
NFYB 4 datasets
ChIP HepG2 ENCFF174VYX 260 bp overlap
ChIP K-562 ENCSR000EGQ.NFYB.K-562 261 bp overlap
ChIP K-562 GSE26439.NFYB.K-562 162 bp overlap
ChIP K562 ENCFF709RXX 126 bp overlap
NFYC 1 dataset
ChIP HepG2 ENCFF836FYP 304 bp overlap
NR2F2 1 dataset
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 613 bp overlap
OGG1 1 dataset
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 306 bp overlap
PAX1 1 dataset
Motif DE_12h DE_12h-PAX1_MA0779.2 16 bp overlap
PAX8 1 dataset
Motif DE_12h DE_12h-PAX8_MA2094.1 16 bp overlap
PKNOX1 1 dataset
ChIP K562 ENCFF236IUS 239 bp overlap
POLR2H 1 dataset
ChIP K562 ENCFF377NHG 343 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 537 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 236 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 465 bp overlap
RAD21 2 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
RBFOX2 1 dataset
ChIP K562 ENCFF967GRF 336 bp overlap
REST 1 dataset
Motif ES_0h ES_0h-REST_MA0138.3 20 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 701 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 695 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 159 bp overlap
SMARCA4 2 datasets
ChIP 22Rv1 GSE115615.SMARCA4.22Rv1 251 bp overlap
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 246 bp overlap
SNAI1 2 datasets
Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap
Motif DE_24h DE_24h-SNAI1_MA1558.2 7 bp overlap
SNAI3 2 datasets
Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap
Motif DE_24h DE_24h-SNAI3_MA1559.2 9 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 266 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 598 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 524 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 308 bp overlap
TBP 2 datasets
ChIP K-562 GSE55306.TBP.K-562 128 bp overlap
ChIP K-562 ENCSR000EHA.TBP.K-562 60 bp overlap
TCF12 2 datasets
Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap
Motif DE_24h DE_24h-TCF12_MA1648.2 7 bp overlap
TCF3 2 datasets
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
Motif DE_24h DE_24h-TCF3_MA0522.4 7 bp overlap
TCF4 2 datasets
Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap
Motif DE_24h DE_24h-TCF4_MA0830.3 8 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap
TFAP2C 1 dataset
Motif DE_12h DE_12h-TFAP2C_MA0524.3 11 bp overlap
TRIM25 2 datasets
ChIP BT-549 GSE79588.TRIM25.BT-549 237 bp overlap
ChIP BT-549 GSE79588.TRIM25.BT-549 176 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 84 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 652 bp overlap
ZBTB33 2 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 285 bp overlap
ChIP K562 ENCFF875HLX 219 bp overlap
ZBTB7B 2 datasets
Motif DE_12h DE_12h-ZBTB7B_MA0694.2 10 bp overlap
Motif ES_0h ES_0h-ZBTB7B_MA0694.2 10 bp overlap
ZEB1 2 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
ZNF213 2 datasets
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
Motif DE_24h DE_24h-ZNF213_MA2121.1 12 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 280 bp overlap
ZNF682 1 dataset
Motif ES_0h ES_0h-ZNF682_MA1599.2 11 bp overlap
Zfp335 2 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif DE_24h DE_24h-Zfp335_MA2002.2 7 bp overlap