chr12 : 54,076,078 54,076,326
248 bp 37 TFs 1 linked gene
This 248 bp open chromatin element is linked to ENSG00000250654 and is bound by 37 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
ENSG00000250654 4.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:54,071,078 – 54,081,326
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
37 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP H1 ENCFF399KAM 248 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 160 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 246 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 153 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 111 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 194 bp overlap
CREB1 3 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 146 bp overlap
ChIP H1 ENCFF955PMP 223 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 170 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 212 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 128 bp overlap
EP300 1 dataset
ChIP H1 ENCFF927IYK 248 bp overlap
EZH2 3 datasets
ChIP THP-1 GSE135024.EZH2.THP-1 197 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 248 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 183 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 248 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 175 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 248 bp overlap
HDAC1 1 dataset
ChIP PC-3 GSE147455.HDAC1.PC-3 140 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 110 bp overlap
KDM1A 1 dataset
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 203 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 138 bp overlap
MED1 1 dataset
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 108 bp overlap
NANOG 5 datasets
ChIP GM23338 ENCFF065NZG 248 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 248 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 217 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 210 bp overlap
ChIP hESC GSE18292.NANOG.hESC 164 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 209 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 177 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 131 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 245 bp overlap
POU5F1 6 datasets
ChIP GM23338 ENCFF333SNB 248 bp overlap
ChIP H1 ENCFF698ZAP 199 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 248 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 175 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 248 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 188 bp overlap
RBBP5 1 dataset
ChIP H1 ENCFF905HFL 241 bp overlap
RNF2 4 datasets
ChIP HUES-64 GSE104059.RNF2.HUES-64 237 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 248 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 248 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 248 bp overlap
SIN3A 3 datasets
ChIP H1 ENCFF042ZSL 248 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 209 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 161 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 172 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 200 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 248 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 248 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 180 bp overlap
SUZ12 4 datasets
ChIP H1 ENCFF881NFR 248 bp overlap
ChIP H1 ENCFF881NFR 248 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 152 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 181 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 217 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 238 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 198 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 243 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 248 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 149 bp overlap
ZNF263 2 datasets
ChIP HEK293 ENCFF336CWQ 248 bp overlap
ChIP WTC11 ENCFF893RTM 117 bp overlap