chr12 : 7,705,850 – 7,706,228
378 bp 71 TFs 1 linked gene
This 378 bp open chromatin element is linked to DPPA3 and is bound by 71 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
DPPA3 5.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:7,700,850 – 7,711,228
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
71 transcription factors
Source
Cell type
AR 2 datasets
ChIP MCF-7 GSE48930.AR.MCF-7 248 bp overlap
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 159 bp overlap
ARID1A 1 dataset
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 105 bp overlap
Ahr::Arnt 4 datasets
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_24h DE_24h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_24h DE_24h-AhrArnt_MA0006.2 5 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 218 bp overlap
BRD4 2 datasets
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 314 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.BRD4.MCF-7_ARID1A-KO_4-OHT 270 bp overlap
CBFA2T2 1 dataset
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 378 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 213 bp overlap
CDX2 1 dataset
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 266 bp overlap
CTCF 2 datasets
ChIP Caco-2 ENCSR000DQN.CTCF.Caco-2 128 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 223 bp overlap
CTCFL 1 dataset
Motif DE_24h DE_24h-CTCFL_MA1102.3 8 bp overlap
E2F6 2 datasets
Motif DE_24h DE_24h-E2F6_MA0471.3 8 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 174 bp overlap
EBF3 1 dataset
Motif DE_24h DE_24h-EBF3_MA1637.2 9 bp overlap
ERG 1 dataset
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 185 bp overlap
ESR1 11 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 207 bp overlap
ChIP Ishikawa_M2-3 GSE147141.ESR1.Ishikawa_M2-3 196 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 242 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 208 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 326 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.ESR1.MCF-7_ARID1A-KO_4-OHT 187 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 281 bp overlap
ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 79 bp overlap
ChIP U2OS_100nM-E2 GSE151039.ESR1.U2OS_100nM-E2 207 bp overlap
ChIP U2OS_10nM-E2 GSE151039.ESR1.U2OS_10nM-E2 150 bp overlap
ChIP U2OS_10nM-E2-B GSE151039.ESR1.U2OS_10nM-E2-B 171 bp overlap
Ebf2 1 dataset
Motif DE_24h DE_24h-Ebf2_MA1604.2 9 bp overlap
FOXA1 2 datasets
ChIP LS180 GSE140533.FOXA1.LS180 113 bp overlap
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 258 bp overlap
Foxn1 3 datasets
Motif DE_12h DE_12h-Foxn1_MA1684.1 6 bp overlap
Motif DE_24h DE_24h-Foxn1_MA1684.1 6 bp overlap
Motif DE_24h DE_24h-Foxn1_MA1684.1 6 bp overlap
GSPT2 1 dataset
ChIP HEK293T GSE35197.GSPT2.HEK293T 222 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 218 bp overlap
HNF4A 2 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 254 bp overlap
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 230 bp overlap
KLF1 1 dataset
Motif DE_24h DE_24h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif DE_24h DE_24h-KLF10_MA1511.2 9 bp overlap
KLF11 2 datasets
Motif DE_12h DE_12h-KLF11_MA1512.2 10 bp overlap
Motif DE_24h DE_24h-KLF11_MA1512.2 10 bp overlap
KLF12 2 datasets
Motif DE_12h DE_12h-KLF12_MA0742.2 9 bp overlap
Motif DE_24h DE_24h-KLF12_MA0742.2 9 bp overlap
KLF14 1 dataset
Motif DE_24h DE_24h-KLF14_MA0740.2 9 bp overlap
KLF15 1 dataset
Motif DE_24h DE_24h-KLF15_MA1513.2 8 bp overlap
KLF16 2 datasets
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
Motif DE_24h DE_24h-KLF16_MA0741.1 11 bp overlap
KLF17 1 dataset
Motif DE_24h DE_24h-KLF17_MA1514.2 14 bp overlap
KLF2 1 dataset
Motif DE_24h DE_24h-KLF2_MA1515.2 8 bp overlap
KLF4 2 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 226 bp overlap
Motif DE_24h DE_24h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
KLF6 2 datasets
Motif DE_12h DE_12h-KLF6_MA1517.2 9 bp overlap
Motif DE_24h DE_24h-KLF6_MA1517.2 9 bp overlap
LMO2 1 dataset
ChIP Kasumi-1_SIRUNX1ETO GSE60130.LMO2.Kasumi-1_SIRUNX1ETO 226 bp overlap
MED1 2 datasets
ChIP MCF-7_SHRARS_E2 GSE60270.MED1.MCF-7_SHRARS_E2 139 bp overlap
ChIP VCaP_R1881 GSE148358.MED1.VCaP_R1881 202 bp overlap
MYCN 1 dataset
ChIP Kelly_res GSE115249.MYCN.Kelly_res 132 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 276 bp overlap
NFKB1 1 dataset
ChIP HEK293T GSE129618.NFKB1.HEK293T 281 bp overlap
OGG1 2 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 378 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 378 bp overlap
PATZ1 1 dataset
Motif DE_24h DE_24h-PATZ1_MA1961.2 11 bp overlap
PAX9 1 dataset
Motif DE_24h DE_24h-PAX9_MA0781.2 16 bp overlap
POU5F1 4 datasets
ChIP BG03 GSE21614.POU5F1.BG03 328 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 378 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 357 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 360 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 369 bp overlap
PRDM9 1 dataset
Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 190 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 229 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 250 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 186 bp overlap
SMARCB1 1 dataset
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 209 bp overlap
SP1 1 dataset
Motif DE_24h DE_24h-SP1_MA0079.5 9 bp overlap
SP2 1 dataset
Motif DE_24h DE_24h-SP2_MA0516.3 9 bp overlap
SP3 2 datasets
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
Motif DE_24h DE_24h-SP3_MA0746.3 11 bp overlap
SP5 1 dataset
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
SP8 4 datasets
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
Motif DE_24h DE_24h-SP8_MA0747.2 11 bp overlap
Motif DE_24h DE_24h-SP8_MA0747.2 11 bp overlap
SP9 2 datasets
Motif DE_12h DE_12h-SP9_MA1564.2 10 bp overlap
Motif DE_24h DE_24h-SP9_MA1564.2 10 bp overlap
SPI1 1 dataset
ChIP macrophage_IFNG GSE47188.SPI1.macrophage_IFNG 203 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 237 bp overlap
SRSF7 1 dataset
ChIP Hep-G2 GSE120104.SRSF7.Hep-G2 251 bp overlap
STAT3 2 datasets
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 62 bp overlap
ChIP WA01 ERP004237.STAT3.WA01 254 bp overlap
TEAD4 2 datasets
ChIP SNU-216 GSE44416.TEAD4.SNU-216 209 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 266 bp overlap
TFAP2A 1 dataset
Motif DE_24h DE_24h-TFAP2A_MA0810.2 11 bp overlap
TFDP1 1 dataset
Motif DE_24h DE_24h-TFDP1_MA1122.2 8 bp overlap
YBX1 1 dataset
ChIP HEL GSE146717.YBX1.HEL 351 bp overlap
YY1AP1 1 dataset
ChIP MCF-7_Veh GSE125594.YY1AP1.MCF-7_Veh 178 bp overlap
ZBED4 3 datasets
Motif DE_12h DE_12h-ZBED4_MA2328.1 10 bp overlap
Motif DE_24h DE_24h-ZBED4_MA2328.1 10 bp overlap
Motif DE_24h DE_24h-ZBED4_MA2328.1 10 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 313 bp overlap
ZFP14 1 dataset
Motif DE_24h DE_24h-ZFP14_MA1972.1 15 bp overlap
ZIC1 1 dataset
Motif DE_24h DE_24h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_24h DE_24h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_24h DE_24h-ZIC5_MA1584.2 15 bp overlap
ZNF257 1 dataset
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF740 1 dataset
Motif DE_24h DE_24h-ZNF740_MA0753.3 10 bp overlap
Znf423 1 dataset
Motif DE_24h DE_24h-Znf423_MA0116.1 15 bp overlap
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