chr12 : 3,172,314 3,172,997
683 bp 53 TFs 5 linked genes
This 683 bp open chromatin element is linked to 5 target genes and is bound by 53 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
TSPAN9 95.3 kb Distal Multiome
TEAD4 213.4 kb Distal Multiome
TULP3 295.5 kb Distal Multiome
RHNO1 295.5 kb Distal Multiome
FOXM1 295.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:3,167,314 – 3,177,997
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
53 transcription factors
Source
Cell type
AGO1 2 datasets
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 184 bp overlap
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 184 bp overlap
AR 2 datasets
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 59 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 303 bp overlap
ARNT 1 dataset
ChIP MCF-7_aza GSE85352.ARNT.MCF-7_aza 267 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 79 bp overlap
BRD4 6 datasets
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 135 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 244 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 116 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 117 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 378 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 683 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 533 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 185 bp overlap
DNMT3B 3 datasets
ChIP HUES-8 GSE99346.DNMT3B.HUES-8 228 bp overlap
ChIP HUES-8 GSE99346.DNMT3B.HUES-8 74 bp overlap
ChIP HUES-8_TripleKO-TET1-2-3 GSE99346.DNMT3B.HUES-8_TripleKO-TET1-2-3 502 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 201 bp overlap
ERG 1 dataset
ChIP MCF-7 GSE23730.ERG.MCF-7 50 bp overlap
ESRRG 2 datasets
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 310 bp overlap
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 318 bp overlap
EZH2 2 datasets
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 410 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 683 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 339 bp overlap
ChIP DE DE-FOXA2-2 406 bp overlap
GATA2 4 datasets
ChIP SH-SY5Y ENCFF485YIB 330 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 249 bp overlap
ChIP SK-N-SH ENCFF764OZD 280 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 209 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 637 bp overlap
ChIP DE DE-GATA4-2 678 bp overlap
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 284 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 522 bp overlap
ChIP DE DE-GATA6-2 677 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 634 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 595 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 632 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 678 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 153 bp overlap
GRHL2 1 dataset
ChIP OVCAR-3 GSE71018.GRHL2.OVCAR-3 180 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 201 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 69 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 154 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 82 bp overlap
HNRNPLL 2 datasets
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 192 bp overlap
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 193 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 52 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 395 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 133 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 157 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCFF746HVJ 305 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 157 bp overlap
MYCN 9 datasets
ChIP BE2C GSE80151.MYCN.BE2C 308 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 683 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 223 bp overlap
ChIP Kelly GSE94782.MYCN.Kelly 99 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 194 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 162 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 683 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 308 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 80 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 64 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 168 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 150 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 79 bp overlap
PCBP1 3 datasets
ChIP Hep-G2 ENCSR872EVQ.PCBP1.Hep-G2 59 bp overlap
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 64 bp overlap
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 171 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 254 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 437 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 458 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 194 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 134 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 133 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 683 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 488 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 317 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 529 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 683 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 612 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 163 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 336 bp overlap
SUZ12 1 dataset
ChIP K-562 ENCSR000AUC.SUZ12.K-562 279 bp overlap
TAF15 1 dataset
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 77 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 153 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 51 bp overlap
TBX5 9 datasets
ChIP G296S GSE85628.TBX5.G296S 219 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 219 bp overlap
ChIP G296S_4 GSE85628.TBX5.G296S_4 346 bp overlap
ChIP cardiomyocyte GSE85628.TBX5.cardiomyocyte 406 bp overlap
ChIP cardiomyocyte_1 GSE85628.TBX5.cardiomyocyte_1 406 bp overlap
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 190 bp overlap
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 416 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 302 bp overlap
ChIP hiPSC GSE81585.TBX5.hiPSC 233 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 225 bp overlap
TP63 2 datasets
ChIP breast-organoid GSE113909.TP63.breast-organoid 274 bp overlap
ChIP keratinocyte GSE33571.TP63.keratinocyte 134 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 94 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 94 bp overlap
ZBTB48 2 datasets
ChIP U2OS GSE96776.ZBTB48.U2OS 549 bp overlap
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 683 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 83 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 286 bp overlap
ZNF90 1 dataset
ChIP HEK293T GSE78099.ZNF90.HEK293T 294 bp overlap