chr1 : 204,437,888 204,438,460
572 bp 54 TFs 0 linked genes
This 572 bp open chromatin element has no linked target genes and is bound by 54 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:204,432,888 – 204,443,460
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
54 transcription factors
Source
Cell type
AR 1 dataset
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 164 bp overlap
ARID1A 2 datasets
ChIP 12Z GSE129781.ARID1A.12Z 138 bp overlap
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 435 bp overlap
ARNTL 1 dataset
ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 202 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 288 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 67 bp overlap
BRD4 5 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 428 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 532 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 572 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 133 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 110 bp overlap
BRD9 1 dataset
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD9.MDA-MB-231_JQ1_MGSK2801 68 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 296 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 91 bp overlap
CREBBP 1 dataset
ChIP PC-3 GSE147455.CREBBP.PC-3 207 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 279 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 201 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 144 bp overlap
ESR1 4 datasets
ChIP MCF-7 GSE148277.ESR1.MCF-7 282 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 210 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 210 bp overlap
ChIP breast_tumor_Male_14 GSE104399.ESR1.breast_tumor_Male_14 213 bp overlap
ESRRA 4 datasets
ChIP BT-474 GSE81651.ESRRA.BT-474 284 bp overlap
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 268 bp overlap
ChIP SK-BR-3_EGF GSE81651.ESRRA.SK-BR-3_EGF 209 bp overlap
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 204 bp overlap
FOS 1 dataset
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 286 bp overlap
FOXA1 2 datasets
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 242 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 185 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 572 bp overlap
ChIP DE DE-FOXA2-2 572 bp overlap
GATA2 8 datasets
ChIP SH-SY5Y ENCFF485YIB 262 bp overlap
ChIP SH-SY5Y ENCFF485YIB 54 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 223 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 293 bp overlap
ChIP SK-N-SH ENCFF764OZD 417 bp overlap
ChIP SK-N-SH ENCFF764OZD 283 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 148 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 163 bp overlap
GATA3 5 datasets
ChIP BE2C GSE65664.GATA3.BE2C 158 bp overlap
ChIP BE2C GSE65664.GATA3.BE2C 223 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 258 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 241 bp overlap
ChIP breast_tumor_Male_16 GSE104399.GATA3.breast_tumor_Male_16 289 bp overlap
GATA4 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 126 bp overlap
ChIP DE DE-GATA4-1 572 bp overlap
ChIP DE DE-GATA4-2 572 bp overlap
ChIP foregut GSE117136.GATA4.foregut 181 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 572 bp overlap
ChIP DE DE-GATA6-2 572 bp overlap
GRHL2 1 dataset
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 236 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 572 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 572 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 572 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 59 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 572 bp overlap
JUN 1 dataset
ChIP Karpas-299 GSE151413.JUN.Karpas-299 236 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 275 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 421 bp overlap
MYCN 3 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 281 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 380 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 139 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 327 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 221 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 287 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 228 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 218 bp overlap
NFE2L2 1 dataset
ChIP A-375_A771726 GSE57431.NFE2L2.A-375_A771726 149 bp overlap
NR3C1 1 dataset
ChIP MDA-MB-453 GSE152203.NR3C1.MDA-MB-453 246 bp overlap
NRF1 1 dataset
ChIP HeLa-S3 GSE108856.NRF1.HeLa-S3 116 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 572 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 503 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 572 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 140 bp overlap
RELA 1 dataset
ChIP 786-O GSE86092.RELA.786-O 195 bp overlap
REST 1 dataset
ChIP CD4 GSE49570.REST.CD4 152 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 572 bp overlap
SMAD3 3 datasets
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 62 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 87 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 170 bp overlap
SNAI2 1 dataset
ChIP PC-9_2DF GSE131687.SNAI2.PC-9_2DF 572 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 295 bp overlap
STAT3 2 datasets
ChIP MDA-MB-453 GSE152203.STAT3.MDA-MB-453 289 bp overlap
ChIP MDA-MB-468_EtOH GSE85579.STAT3.MDA-MB-468_EtOH 151 bp overlap
TBX2 3 datasets
ChIP Kelly GSE94822.TBX2.Kelly 231 bp overlap
ChIP Kelly GSE94822.TBX2.Kelly 131 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 262 bp overlap
TCF7L2 1 dataset
ChIP MDA-MB-453 GSE45201.TCF7L2.MDA-MB-453 118 bp overlap
TEAD4 3 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 572 bp overlap
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 144 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 572 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 293 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 120 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 120 bp overlap
YY1AP1 1 dataset
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 189 bp overlap
ZNF311 1 dataset
ChIP HEK293 ENCFF485ZGR 61 bp overlap