chr11 : 27,626,348 – 27,627,487
1,139 bp 70 TFs 1 linked gene
This 1.1 kb open chromatin element is linked to LINC00678 and is bound by 70 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC00678 7.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:27,621,348 – 27,632,487
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
70 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP WTC11 ENCFF556XTF 303 bp overlap
AR 1 dataset
ChIP WTC11 ENCFF267GQJ 305 bp overlap
ARID4B 2 datasets
ChIP WTC11 ENCFF441HDK 457 bp overlap
ChIP WTC11 ENCFF441HDK 314 bp overlap
BRD1 2 datasets
ChIP HUES-64 GSE104059.BRD1.HUES-64 118 bp overlap
ChIP HUES-64 GSE104059.BRD1.HUES-64 320 bp overlap
CHD1 3 datasets
ChIP H1 ENCFF998XEK 264 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 384 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 404 bp overlap
CHD2 2 datasets
ChIP H1 ENCFF991MKH 256 bp overlap
ChIP WA01 ENCSR000EBT.CHD2.WA01 349 bp overlap
CHD7 2 datasets
ChIP WA01 ENCSR000AVA.CHD7.WA01 192 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 159 bp overlap
CREB1 4 datasets
ChIP H1 ENCFF955PMP 321 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 111 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 127 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 80 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 251 bp overlap
EMX1 3 datasets
ChIP WTC11 ENCFF692RZJ 509 bp overlap
ChIP WTC11 ENCFF692RZJ 605 bp overlap
ChIP WTC11 ENCFF692RZJ 166 bp overlap
ERG 2 datasets
ChIP WTC11 ENCFF011YUL 281 bp overlap
ChIP WTC11 ENCFF011YUL 233 bp overlap
ESR1 2 datasets
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 246 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_3 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_3 514 bp overlap
FOXJ3 2 datasets
ChIP WTC11 ENCFF909BTK 380 bp overlap
ChIP WTC11 ENCFF909BTK 405 bp overlap
FOXS1 1 dataset
Motif ES_0h ES_0h-FOXS1_MA2118.1 8 bp overlap
GTF2I 1 dataset
ChIP WTC11 ENCFF255XXZ 345 bp overlap
HOXB4 1 dataset
Motif ES_0h ES_0h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif ES_0h ES_0h-HOXC4_MA1504.2 6 bp overlap
HOXD12::ELK1 1 dataset
Motif ES_0h ES_0h-HOXD12ELK1_MA1958.2 13 bp overlap
HOXD3 1 dataset
Motif ES_0h ES_0h-HOXD3_MA0912.2 8 bp overlap
HOXD4 1 dataset
Motif ES_0h ES_0h-HOXD4_MA1507.2 6 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 210 bp overlap
JUN 1 dataset
ChIP HAEC_oxpapc_4h GSE89970.JUN.HAEC_oxpapc_4h 130 bp overlap
JUND 3 datasets
ChIP H1 ENCFF468JZD 191 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 159 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 297 bp overlap
MAFK 1 dataset
ChIP H1 ENCFF854XWE 285 bp overlap
MEF2A 1 dataset
Motif ES_0h ES_0h-MEF2A_MA0052.5 10 bp overlap
MEF2C 1 dataset
Motif ES_0h ES_0h-MEF2C_MA0497.2 11 bp overlap
MITF 6 datasets
ChIP 501-mel GSE137522.MITF.501-mel 206 bp overlap
ChIP 501-mel GSE61965.MITF.501-mel 173 bp overlap
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 261 bp overlap
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 220 bp overlap
ChIP K-562 ENCSR797SWM.MITF.K-562 179 bp overlap
ChIP K562 ENCFF731XJJ 227 bp overlap
MPHOSPH8 1 dataset
ChIP H9 GSE95374.MPHOSPH8.H9 166 bp overlap
NFATC4 1 dataset
ChIP WTC11 ENCFF744MZI 271 bp overlap
NIPBL 1 dataset
ChIP WA09 GSE105028.NIPBL.WA09 422 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 218 bp overlap
NR1I3 1 dataset
Motif ES_0h ES_0h-NR1I3_MA1534.2 8 bp overlap
NR2F1 1 dataset
ChIP GM12878 ENCSR514VYD.NR2F1.GM12878 597 bp overlap
NR5A1 1 dataset
ChIP hESC GSE101087.NR5A1.hESC 441 bp overlap
POLR2A 6 datasets
ChIP GM23338 ENCFF450WCS 1139 bp overlap
ChIP H1 ENCFF566JSR 1139 bp overlap
ChIP H1 ENCFF770YBQ 313 bp overlap
ChIP H1 ENCFF770YBQ 471 bp overlap
ChIP H1 ENCFF770YBQ 341 bp overlap
ChIP H1 ENCFF833NJP 1139 bp overlap
POU2F3 2 datasets
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 222 bp overlap
POU5F1 3 datasets
Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 391 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 375 bp overlap
POU6F1 1 dataset
Motif ES_0h ES_0h-POU6F1_MA1549.2 7 bp overlap
PRRX2 2 datasets
ChIP WTC11 ENCFF107JGJ 301 bp overlap
ChIP WTC11 ENCFF107JGJ 117 bp overlap
Prdm14 1 dataset
Motif ES_0h ES_0h-Prdm14_MA1998.2 8 bp overlap
RARA::RXRA 1 dataset
Motif ES_0h ES_0h-RARARXRA_MA0159.1 17 bp overlap
RBPJ 2 datasets
ChIP NHEK GSE29498.RBPJ.NHEK 227 bp overlap
ChIP NHEK GSE29498.RBPJ.NHEK 249 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000BIS.SIN3A.WA01 290 bp overlap
SIRT6 3 datasets
ChIP WA01 ENCSR000AUS.SIRT6.WA01 123 bp overlap
ChIP WA01 ENCSR000AUS.SIRT6.WA01 348 bp overlap
ChIP WA01 ENCSR000AUS.SIRT6.WA01 146 bp overlap
SMAD3 1 dataset
ChIP WTC11 ENCFF815YYQ 357 bp overlap
SND1 1 dataset
ChIP NHEK GSE29498.SND1.NHEK 185 bp overlap
SP1 1 dataset
ChIP WTC11 ENCFF688PEU 501 bp overlap
SP4 4 datasets
ChIP H1 ENCFF473YOB 597 bp overlap
ChIP H1 ENCFF473YOB 372 bp overlap
ChIP WA01 ENCSR000BQV.SP4.WA01 709 bp overlap
ChIP WA01 ENCSR000BQV.SP4.WA01 164 bp overlap
TAF1 1 dataset
ChIP H1 ENCFF478SZO 485 bp overlap
TAF7 4 datasets
ChIP H1 ENCFF061XZZ 204 bp overlap
ChIP H1 ENCFF061XZZ 337 bp overlap
ChIP H1 ENCFF061XZZ 337 bp overlap
ChIP WA01 ENCSR000BLU.TAF7.WA01 207 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 405 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 168 bp overlap
TFE3 1 dataset
ChIP K562 ENCFF697ABG 198 bp overlap
TP53 1 dataset
ChIP WTC11 ENCFF359JCU 355 bp overlap
USF1 4 datasets
ChIP H1 ENCFF090WVU 138 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 135 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 202 bp overlap
ChIP WTC11 ENCFF699QGS 245 bp overlap
USF2 2 datasets
ChIP WA01 ENCSR000ECD.USF2.WA01 116 bp overlap
ChIP WTC11 ENCFF139JAW 263 bp overlap
USP7 1 dataset
ChIP HEK293T GSE61048.USP7.HEK293T 161 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 227 bp overlap
ZBTB32 1 dataset
Motif ES_0h ES_0h-ZBTB32_MA1580.1 10 bp overlap
ZFP14 1 dataset
Motif ES_0h ES_0h-ZFP14_MA1972.1 15 bp overlap
ZMAT4 2 datasets
ChIP WTC11 ENCFF608UXZ 120 bp overlap
ChIP WTC11 ENCFF608UXZ 241 bp overlap
ZNF16 1 dataset
Motif ES_0h ES_0h-ZNF16_MA1654.2 21 bp overlap
ZNF232 1 dataset
ChIP WTC11 ENCFF901BGD 461 bp overlap
ZNF283 1 dataset
ChIP HEK293T GSE78099.ZNF283.HEK293T 134 bp overlap
ZNF416 2 datasets
ChIP WTC11 ENCFF407TAZ 271 bp overlap
ChIP WTC11 ENCFF407TAZ 271 bp overlap
ZNF425 2 datasets
ChIP WTC11 ENCFF359IXT 268 bp overlap
ChIP WTC11 ENCFF359IXT 62 bp overlap
ZNF460 1 dataset
Motif ES_0h ES_0h-ZNF460_MA1596.1 16 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 192 bp overlap
ZNF532 3 datasets
ChIP WTC11 ENCFF373VBX 192 bp overlap
ChIP WTC11 ENCFF373VBX 285 bp overlap
ChIP WTC11 ENCFF373VBX 110 bp overlap
ZNF671 3 datasets
ChIP WTC11 ENCFF053HBV 265 bp overlap
ChIP WTC11 ENCFF053HBV 265 bp overlap
ChIP WTC11 ENCFF053HBV 226 bp overlap
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