chr1 : 197,268,090 – 197,268,438
348 bp 50 TFs 1 linked gene
This 348 bp open chromatin element is linked to CRB1 and is bound by 50 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CRB1 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:197,263,090 – 197,273,438
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
50 transcription factors
Source
Cell type
AR 20 datasets
ChIP 22Rv1_R1881 GSE80742.AR.22Rv1_R1881 65 bp overlap
ChIP LNCaP-clone-FGC_DHT-ABBV-075 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-075 112 bp overlap
ChIP LNCaP-clone-FGC_DHT-ABBV-744 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-744 281 bp overlap
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.AR.LNCaP-clone-FGC_DHT-DMSO 284 bp overlap
ChIP LNCaP_D226N_shFOXA1_Ethanol GSE128883.AR.LNCaP_D226N_shFOXA1_Ethanol 254 bp overlap
ChIP LNCaP_DSG GSE114737.AR.LNCaP_DSG 51 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 222 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 88 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 53 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 274 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 60 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 117 bp overlap
ChIP VCaP-LTAD_DHT_10nM GSE94577.AR.VCaP-LTAD_DHT_10nM 139 bp overlap
ChIP VCaP-LTAD_DHT_1nM GSE94577.AR.VCaP-LTAD_DHT_1nM 103 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 70 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 180 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 133 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 348 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 142 bp overlap
ChIP VCaP_SH1_DHT GSE79128.AR.VCaP_SH1_DHT 100 bp overlap
BRD4 12 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 348 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 178 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 321 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 310 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 167 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 324 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 348 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-pos 300 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 253 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 70 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 324 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 154 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 140 bp overlap
CREBBP_M768 1 dataset
ChIP NCI-H3396_E2 GSE32349.CREBBP_M768.NCI-H3396_E2 96 bp overlap
CTCF 2 datasets
ChIP dorsolateral prefrontal cortex ENCFF149PUN 212 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF406ZHG 204 bp overlap
DPF2 5 datasets
ChIP BIN-67 GSE117734.DPF2.BIN-67 248 bp overlap
ChIP BIN-67_ctrl GSE117734.DPF2.BIN-67_ctrl 234 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.DPF2.BIN-67_lentivirus-SMARCA4 179 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-T910M 200 bp overlap
ChIP SCCOHT-1 GSE117734.DPF2.SCCOHT-1 211 bp overlap
DRAP1 1 dataset
ChIP GM12878 GSE97661.DRAP1.GM12878 214 bp overlap
ESR1 1 dataset
ChIP MCF-7_Veh GSE67295.ESR1.MCF-7_Veh 119 bp overlap
EZH2 1 dataset
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 228 bp overlap
FEZF2 1 dataset
Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap
FOXA1 1 dataset
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 61 bp overlap
GABPA 1 dataset
ChIP VCaP GSE49091.GABPA.VCaP 208 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR000BMG.HDAC2.K-562 116 bp overlap
JUND 2 datasets
ChIP H1 ENCFF468JZD 219 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 180 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 139 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 199 bp overlap
MAFA 1 dataset
Motif ES_0h ES_0h-MAFA_MA1521.2 13 bp overlap
MEF2D 1 dataset
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 296 bp overlap
MLLT3 1 dataset
ChIP THP-1 GSE79899.MLLT3.THP-1 155 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 266 bp overlap
MXI1 1 dataset
ChIP neural ENCSR934NHU.MXI1.neural 164 bp overlap
MYCN 2 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 218 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 197 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 284 bp overlap
NR3C1 2 datasets
ChIP GM12878 ENCSR904YPP.NR3C1.GM12878 109 bp overlap
ChIP T-47D_R5020 GSE126859.NR3C1.T-47D_R5020 186 bp overlap
Nr1h3::Rxra 1 dataset
Motif ES_0h ES_0h-Nr1h3Rxra_MA0494.2 16 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 348 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 348 bp overlap
PRDM15 3 datasets
ChIP Hep-G2 ENCSR011INW.PRDM15.Hep-G2 232 bp overlap
ChIP HepG2 ENCFF259LUZ 142 bp overlap
ChIP WTC11 ENCFF108TMF 187 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 95 bp overlap
RELA 1 dataset
ChIP MCF-7_IL1b_45m GSE67295.RELA.MCF-7_IL1b_45m 143 bp overlap
RELB 1 dataset
Motif ES_0h ES_0h-RELB_MA1117.2 7 bp overlap
REST 1 dataset
ChIP hippocampus GSE144226.REST.hippocampus 235 bp overlap
RNF2 1 dataset
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 133 bp overlap
SMARCA4 2 datasets
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 109 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 212 bp overlap
SMARCB1 1 dataset
ChIP proliferating-human-fibroblast_ASO_LINC GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_LINC 177 bp overlap
SMC1A-B 1 dataset
ChIP Kelly_shLUC-res GSE115248.SMC1A-B.Kelly_shLUC-res 116 bp overlap
SMC3 3 datasets
ChIP HeLa GSE126990.SMC3.HeLa 151 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 151 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 151 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 172 bp overlap
SP1 3 datasets
ChIP GM12878 ENCSR000BHK.SP1.GM12878 142 bp overlap
ChIP H1 ENCFF263FUH 135 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 229 bp overlap
SREBF2 1 dataset
ChIP HeLa-S3 ENCSR611WZO.SREBF2.HeLa-S3 286 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 127 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 141 bp overlap
USF1 1 dataset
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 119 bp overlap
VEZF1 1 dataset
Motif ES_0h ES_0h-VEZF1_MA1578.2 6 bp overlap
YY1 3 datasets
ChIP SK-N-SH ENCSR000BSM.YY1.SK-N-SH 183 bp overlap
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 150 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 170 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 153 bp overlap
ZNF384 1 dataset
Motif ES_0h ES_0h-ZNF384_MA1125.2 8 bp overlap
ZNF549 1 dataset
Motif ES_0h ES_0h-ZNF549_MA1728.2 8 bp overlap
ZNF580 1 dataset
ChIP HEK293 ENCSR668HOP.ZNF580.HEK293 212 bp overlap
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