chr9 : 116,800,942 116,801,363
421 bp 51 TFs 0 linked genes
This 421 bp open chromatin element has no linked target genes and is bound by 51 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:116,795,942 – 116,806,363
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
51 transcription factors
Source
Cell type
ASCL1 2 datasets
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 206 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 109 bp overlap
BCL6 1 dataset
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 120 bp overlap
CASZ1 2 datasets
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 382 bp overlap
ChIP rhabdomyosarcoma_Trametinib GSE126143.CASZ1.rhabdomyosarcoma_Trametinib 201 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 421 bp overlap
CHD7 2 datasets
ChIP WA01 ENCSR000AVA.CHD7.WA01 132 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 408 bp overlap
CIITA 1 dataset
ChIP Raji_AB1 GSE52941.CIITA.Raji_AB1 172 bp overlap
CREB1 2 datasets
ChIP GM12878 ENCFF870CVH 76 bp overlap
ChIP GM12878 ENCSR000BUF.CREB1.GM12878 178 bp overlap
CREM 2 datasets
ChIP GM12878 ENCFF391UGE 187 bp overlap
ChIP GM12878 ENCSR839XZU.CREM.GM12878 84 bp overlap
CTCF 1 dataset
ChIP RH4 GSE83726.CTCF.RH4 259 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 348 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 90 bp overlap
EZH2 4 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 378 bp overlap
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 106 bp overlap
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 421 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 121 bp overlap
FLI1 5 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 324 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 302 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 301 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 319 bp overlap
ChIP A-673_Mut9_EWSFL-kd GSE94480.FLI1.A-673_Mut9_EWSFL-kd 250 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 160 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 331 bp overlap
ChIP DE DE-GATA6-2 235 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 352 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 421 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 421 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 421 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 421 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 300 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 421 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 244 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 340 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 126 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 217 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 258 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 332 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 123 bp overlap
MYC 2 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 155 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 224 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 164 bp overlap
MYOD1 6 datasets
ChIP RD GSE137168.MYOD1.RD 240 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 217 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 421 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 225 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 358 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 314 bp overlap
MYOG 3 datasets
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 271 bp overlap
ChIP RH4 GSE83726.MYOG.RH4 247 bp overlap
ChIP RH4_DMSO-6H GSE116344.MYOG.RH4_DMSO-6H 214 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 419 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 168 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 421 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 234 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 253 bp overlap
NEUROD1 2 datasets
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 242 bp overlap
ChIP NCI-H524 GSE69394.NEUROD1.NCI-H524 131 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 181 bp overlap
RAD21 1 dataset
ChIP RH4 GSE83726.RAD21.RH4 211 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 380 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 359 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 135 bp overlap
REST 1 dataset
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 289 bp overlap
RFX5 4 datasets
ChIP GM12878 ENCFF768MIX 134 bp overlap
ChIP GM12878 ENCSR000DZW.RFX5.GM12878 116 bp overlap
ChIP SK-N-SH ENCFF755HLO 177 bp overlap
ChIP SK-N-SH ENCSR000EHY.RFX5.SK-N-SH 141 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 370 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 421 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 421 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 339 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 308 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 343 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 254 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 317 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 142 bp overlap
SMARCA4 4 datasets
ChIP NGP GSE134626.SMARCA4.NGP 140 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 149 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 258 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 255 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 206 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 302 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 236 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 180 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 211 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 265 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 140 bp overlap
SPI1 7 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 156 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 189 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 95 bp overlap
ChIP DC_LPS GSE123347.SPI1.DC_LPS 73 bp overlap
ChIP GM12891 ENCFF563IUT 118 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 176 bp overlap
ChIP NCI-H929 GSE56857.SPI1.NCI-H929 179 bp overlap
SPIB 1 dataset
ChIP OCI-Ly3_SHCTR GSE56857.SPIB.OCI-Ly3_SHCTR 193 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 131 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 245 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 242 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 257 bp overlap