chr1 : 180,239,601 180,239,922
321 bp 54 TFs 1 linked gene
This 321 bp open chromatin element is linked to LHX4 and is bound by 54 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LHX4 9.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:180,234,601 – 180,244,922
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
54 transcription factors
Source
Cell type
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 163 bp overlap
ChIP H1 ENCFF399KAM 321 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 321 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 58 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 321 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 321 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 208 bp overlap
BRD3 1 dataset
ChIP K-562_iBET-IFNG GSE138084.BRD3.K-562_iBET-IFNG 177 bp overlap
BRD4 1 dataset
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 178 bp overlap
CBX2 1 dataset
ChIP K562 ENCFF578AQI 102 bp overlap
CBX8 1 dataset
ChIP K562 ENCFF485TBL 74 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 218 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 172 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCFF432ZEW 299 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 198 bp overlap
ELF1 5 datasets
ChIP A-549 GSE122203.ELF1.A-549 63 bp overlap
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 121 bp overlap
ChIP K-562 ENCSR000BMD.ELF1.K-562 128 bp overlap
ChIP K562 ENCFF496AKI 114 bp overlap
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 177 bp overlap
ELF3 1 dataset
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 121 bp overlap
EP300 1 dataset
ChIP hESC GSE17917.EP300.hESC 304 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 288 bp overlap
EZH2 15 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 321 bp overlap
ChIP DND41 ENCSR000ASW.EZH2.DND41 321 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 201 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 256 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 321 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 321 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 185 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 129 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 216 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 321 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 219 bp overlap
ChIP fibroblast of lung ENCFF479BAW 321 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 321 bp overlap
ChIP keratinocyte ENCFF070STK 304 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 259 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 289 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 214 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000BNR.HDAC2.WA01 139 bp overlap
JARID2 2 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 201 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 161 bp overlap
JUN 2 datasets
ChIP ESC S34-ESC-d0-JUN-exp2 312 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 297 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 275 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 321 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 206 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 292 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 244 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 172 bp overlap
ChIP H1 ENCFF747ZPQ 232 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 321 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 321 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 297 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 321 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 253 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 225 bp overlap
ChIP hESC GSE18292.NANOG.hESC 196 bp overlap
NIPBL 2 datasets
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 321 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 244 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
PHF19 1 dataset
ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 294 bp overlap
POU5F1 3 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 321 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 321 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 82 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 229 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 230 bp overlap
REST 1 dataset
ChIP LNCaP GSE119385.REST.LNCaP 206 bp overlap
RNF2 3 datasets
ChIP K-562 ENCSR138FUZ.RNF2.K-562 108 bp overlap
ChIP K562 ENCFF022XJR 183 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 243 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 214 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 264 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 111 bp overlap
SMAD3 4 datasets
ChIP BG03 GSE21614.SMAD3.BG03 156 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 289 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 319 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 275 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 321 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 321 bp overlap
SMARCC1 5 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 147 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 170 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 197 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 254 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 321 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 256 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 111 bp overlap
SS18 3 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 321 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 321 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 298 bp overlap
SUZ12 3 datasets
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 321 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 321 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 229 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 186 bp overlap
TBP 2 datasets
ChIP H1 ENCFF859IIO 318 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 189 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 247 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 234 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 321 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 321 bp overlap
ZFP36 1 dataset
ChIP K-562 ENCSR776CYN.ZFP36.K-562 158 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 254 bp overlap
ZNF263 2 datasets
ChIP WTC11 ENCFF893RTM 299 bp overlap
ChIP WTC11 ENCFF893RTM 96 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 292 bp overlap