chr9 : 24,502,484 – 24,503,122

638 bp 70 TFs 0 linked genes

This 638 bp open chromatin element has no linked target genes and is bound by 70 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

70 transcription factors

ARID1A 2 datasets

ChIP HAP1 GSE108387.ARID1A.HAP1 304 bp overlap

ChIP NGP GSE134626.ARID1A.NGP 157 bp overlap

ASCL1 4 datasets

Motif DE_12h DE_12h-ASCL1_MA1100.3 8 bp overlap

Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap

ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 149 bp overlap

ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 154 bp overlap

ATF2 1 dataset

ChIP WA01 ENCSR000BQU.ATF2.WA01 136 bp overlap

BAP1 1 dataset

ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 296 bp overlap

BRD4 4 datasets

ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 250 bp overlap

ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 506 bp overlap

ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 317 bp overlap

ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 638 bp overlap

Bach1::Mafk 1 dataset

Motif DE_12h DE_12h-Bach1Mafk_MA0591.2 12 bp overlap

CHD4 1 dataset

ChIP SCMC GSE155861.CHD4.SCMC 500 bp overlap

CHD7 3 datasets

ChIP WA01 ENCSR000AVA.CHD7.WA01 132 bp overlap

ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 278 bp overlap

ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 633 bp overlap

CREB1 2 datasets

ChIP H1 ENCFF955PMP 321 bp overlap

ChIP WA01 ENCSR000BSN.CREB1.WA01 139 bp overlap

CTCF 1 dataset

ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 385 bp overlap

ETS1 2 datasets

ChIP GM23338 ENCFF701IZH 377 bp overlap

ChIP hESC ENCSR534VHI.ETS1.hESC 128 bp overlap

EZH2 1 dataset

ChIP neural progenitor cell ENCFF472NFV 638 bp overlap

FIGLA 1 dataset

Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap

FOXB1 1 dataset

Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap

Foxl2 1 dataset

Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap

GRHL2 1 dataset

Motif DE_12h DE_12h-GRHL2_MA1105.3 8 bp overlap

HAND2 1 dataset

ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 103 bp overlap

HDAC2 1 dataset

ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 344 bp overlap

Hand1 1 dataset

Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap

JUN 3 datasets

ChIP ESC S24-ESC-d0-JUN-exp1 413 bp overlap

ChIP ESC S34-ESC-d0-JUN-exp2 231 bp overlap

ChIP HUES-8 GSE109524.JUN.HUES-8 495 bp overlap

JUN::JUNB 1 dataset

Motif DE_12h DE_12h-JUNJUNB_MA1132.2 8 bp overlap

MAF::NFE2 1 dataset

Motif DE_12h DE_12h-MAFNFE2_MA0501.2 11 bp overlap

MAFG::NFE2L1 1 dataset

Motif DE_12h DE_12h-MAFGNFE2L1_MA0089.3 11 bp overlap

MAX 2 datasets

ChIP NCI-H128 GSE41105.MAX.NCI-H128 143 bp overlap

ChIP WA01 ENCSR000EUP.MAX.WA01 143 bp overlap

MORC2 1 dataset

ChIP H9 GSE95374.MORC2.H9 184 bp overlap

MTA2 1 dataset

ChIP RH4 GSE155861.MTA2.RH4 188 bp overlap

MTF1 1 dataset

Motif DE_12h DE_12h-MTF1_MA0863.1 14 bp overlap

MYC 1 dataset

ChIP NCI-H2171 GSE41105.MYC.NCI-H2171 282 bp overlap

MYOD1 1 dataset

Motif DE_12h DE_12h-MYOD1_MA0499.3 9 bp overlap

NANOG 8 datasets

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 140 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 580 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 531 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 139 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 391 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 349 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 251 bp overlap

ChIP hESC GSE18292.NANOG.hESC 207 bp overlap

NEUROD1 1 dataset

ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 241 bp overlap

NHLH2 1 dataset

Motif DE_12h DE_12h-NHLH2_MA1529.2 16 bp overlap

NIPBL 2 datasets

ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 312 bp overlap

ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 287 bp overlap

Nfe2l2 1 dataset

Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap

PAX3-FOXO1 1 dataset

ChIP RH3 GSE83726.PAX3-FOXO1.RH3 57 bp overlap

PHOX2B 1 dataset

ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 71 bp overlap

POU5F1 5 datasets

ChIP GM23338 ENCFF333SNB 311 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 615 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 289 bp overlap

ChIP WA01 ENCSR000BMU.POU5F1.WA01 138 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 126 bp overlap

RAD21 3 datasets

ChIP HAP1 GSE126634.RAD21.HAP1 486 bp overlap

ChIP HAP1 GSE152721.RAD21.HAP1 462 bp overlap

ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 209 bp overlap

RBBP4 2 datasets

ChIP RH5 GSE155861.RBBP4.RH5 157 bp overlap

ChIP SCMC GSE155861.RBBP4.SCMC 552 bp overlap

SCRT1 1 dataset

Motif DE_12h DE_12h-SCRT1_MA0743.3 10 bp overlap

SCRT2 1 dataset

Motif DE_12h DE_12h-SCRT2_MA0744.3 10 bp overlap

SMAD2 1 dataset

ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 317 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 456 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 329 bp overlap

SMAD2_3 2 datasets

ChIP ESC S23-ESC-d0-SMAD2_3-exp1 270 bp overlap

ChIP ESC S33-ESC-d0-SMAD2_3-exp2 275 bp overlap

SMAD3 1 dataset

ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 188 bp overlap

SMARCA4 3 datasets

ChIP hiPSC GSE124903.SMARCA4.hiPSC 222 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 624 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 318 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 552 bp overlap

SMARCC1 2 datasets

ChIP ESC S25-ESC-d0-BAF155-exp1 320 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 514 bp overlap

SNAI1 1 dataset

Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap

SNAI2 1 dataset

Motif DE_12h DE_12h-SNAI2_MA0745.3 8 bp overlap

SNAI3 1 dataset

Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap

SOX2 2 datasets

ChIP HNSC GSE69479.SOX2.HNSC 554 bp overlap

ChIP hESC GSE18292.SOX2.hESC 136 bp overlap

SP1 1 dataset

ChIP WA01 ENCSR000BIR.SP1.WA01 75 bp overlap

TCF12 2 datasets

Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap

ChIP WA01 ENCSR000BIT.TCF12.WA01 359 bp overlap

TCF3 2 datasets

Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap

ChIP NPC GSE154479.TCF3.NPC 577 bp overlap

TCF4 1 dataset

Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap

TFAP4::FLI1 1 dataset

Motif DE_12h DE_12h-TFAP4FLI1_MA1967.2 14 bp overlap

YY1 1 dataset

ChIP WA01 ENCSR000BKD.YY1.WA01 125 bp overlap

ZEB1 1 dataset

Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap

ZNF157 1 dataset

Motif DE_12h DE_12h-ZNF157_MA2331.1 21 bp overlap

ZNF207 1 dataset

ChIP WA09 GSE118632.ZNF207.WA09 253 bp overlap

ZNF331 1 dataset

Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap

ZNF462 2 datasets

ChIP GM23338 ENCFF896CCA 251 bp overlap

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 452 bp overlap

ZNF708 1 dataset

Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap

ZNF768 1 dataset

Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap

ZSCAN29 2 datasets

Motif DE_12h DE_12h-ZSCAN29_MA1602.2 11 bp overlap

ZSCAN4 1 dataset

Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap

Zic1::Zic2 1 dataset

Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap

Zic2 1 dataset

Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap

Zic3 1 dataset

Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap