chr9 : 6,021,445 – 6,021,997
552 bp 90 TFs 3 linked genes
This 552 bp open chromatin element is linked to RANBP6, ENSG00000228739, and ERMP1 and is bound by 90 transcription factors.
Linked Genes
3 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RANBP6 5.8 kb Proximal Proximity
ENSG00000228739 25.7 kb Distal Multiome
ERMP1 188.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:6,016,445 – 6,026,997
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
90 transcription factors
Source
Cell type
ASCL1 3 datasets
Motif DE_24h DE_24h-ASCL1_MA1631.2 9 bp overlap
Motif DE_36h DE_36h-ASCL1_MA1631.2 9 bp overlap
Motif DE_48h DE_48h-ASCL1_MA1631.2 9 bp overlap
Atoh1 1 dataset
Motif DE_72h DE_72h-Atoh1_MA1467.3 7 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 296 bp overlap
Crx 3 datasets
Motif DE_24h DE_24h-Crx_MA0467.3 6 bp overlap
Motif DE_36h DE_36h-Crx_MA0467.3 6 bp overlap
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
Dmbx1 3 datasets
Motif DE_24h DE_24h-Dmbx1_MA0883.2 10 bp overlap
Motif DE_36h DE_36h-Dmbx1_MA0883.2 10 bp overlap
Motif DE_48h DE_48h-Dmbx1_MA0883.2 10 bp overlap
EOMES 1 dataset
Motif DE_36h DE_36h-EOMES_MA0800.2 9 bp overlap
ERF::FIGLA 1 dataset
Motif DE_72h DE_72h-ERFFIGLA_MA1934.2 13 bp overlap
ESR2 1 dataset
Motif DE_72h DE_72h-ESR2_MA0258.2 15 bp overlap
Elf5 1 dataset
Motif DE_72h DE_72h-Elf5_MA0136.4 8 bp overlap
FEZF2 1 dataset
Motif DE_72h DE_72h-FEZF2_MA2341.1 8 bp overlap
FIGLA 4 datasets
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
Motif DE_36h DE_36h-FIGLA_MA0820.2 6 bp overlap
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 378 bp overlap
ChIP DE DE-GATA4-2 490 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 351 bp overlap
ChIP DE DE-GATA6-2 552 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 302 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 552 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 357 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 300 bp overlap
GSC 3 datasets
Motif DE_24h DE_24h-GSC_MA0648.2 6 bp overlap
Motif DE_36h DE_36h-GSC_MA0648.2 6 bp overlap
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
GSC2 3 datasets
Motif DE_24h DE_24h-GSC2_MA0891.2 6 bp overlap
Motif DE_36h DE_36h-GSC2_MA0891.2 6 bp overlap
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
HAND2 1 dataset
Motif DE_72h DE_72h-HAND2_MA1638.2 6 bp overlap
HOXA10 3 datasets
Motif DE_24h DE_24h-HOXA10_MA0899.2 9 bp overlap
Motif DE_36h DE_36h-HOXA10_MA0899.2 9 bp overlap
Motif DE_48h DE_48h-HOXA10_MA0899.2 9 bp overlap
HOXD9 3 datasets
Motif DE_24h DE_24h-HOXD9_MA0913.3 9 bp overlap
Motif DE_36h DE_36h-HOXD9_MA0913.3 9 bp overlap
Motif DE_48h DE_48h-HOXD9_MA0913.3 9 bp overlap
Hnf1A 3 datasets
Motif DE_24h DE_24h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_36h DE_36h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_48h DE_48h-Hnf1A_MA1991.2 10 bp overlap
IKZF1 1 dataset
Motif DE_72h DE_72h-IKZF1_MA1508.2 8 bp overlap
IKZF2 2 datasets
Motif DE_72h DE_72h-IKZF2_MA2326.1 6 bp overlap
Motif DE_72h DE_72h-IKZF2_MA2326.1 6 bp overlap
IRF3 3 datasets
Motif DE_24h DE_24h-IRF3_MA1418.2 17 bp overlap
Motif DE_48h DE_48h-IRF3_MA1418.2 17 bp overlap
Motif DE_72h DE_72h-IRF3_MA1418.2 17 bp overlap
IRF4 3 datasets
Motif DE_24h DE_24h-IRF4_MA1419.2 14 bp overlap
Motif DE_48h DE_48h-IRF4_MA1419.2 14 bp overlap
Motif DE_72h DE_72h-IRF4_MA1419.2 14 bp overlap
IRF6 3 datasets
Motif DE_24h DE_24h-IRF6_MA1509.1 9 bp overlap
Motif DE_48h DE_48h-IRF6_MA1509.1 9 bp overlap
Motif DE_72h DE_72h-IRF6_MA1509.1 9 bp overlap
IRF7 3 datasets
Motif DE_24h DE_24h-IRF7_MA0772.2 13 bp overlap
Motif DE_48h DE_48h-IRF7_MA0772.2 13 bp overlap
Motif DE_72h DE_72h-IRF7_MA0772.2 13 bp overlap
IRF8 3 datasets
Motif DE_24h DE_24h-IRF8_MA0652.2 13 bp overlap
Motif DE_48h DE_48h-IRF8_MA0652.2 13 bp overlap
Motif DE_72h DE_72h-IRF8_MA0652.2 13 bp overlap
IRF9 3 datasets
Motif DE_24h DE_24h-IRF9_MA0653.1 15 bp overlap
Motif DE_48h DE_48h-IRF9_MA0653.1 15 bp overlap
Motif DE_72h DE_72h-IRF9_MA0653.1 15 bp overlap
Irf1 3 datasets
Motif DE_24h DE_24h-Irf1_MA0050.4 11 bp overlap
Motif DE_48h DE_48h-Irf1_MA0050.4 11 bp overlap
Motif DE_72h DE_72h-Irf1_MA0050.4 11 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 301 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 288 bp overlap
KLF1 3 datasets
Motif DE_24h DE_24h-KLF1_MA0493.3 8 bp overlap
Motif DE_36h DE_36h-KLF1_MA0493.3 8 bp overlap
Motif DE_48h DE_48h-KLF1_MA0493.3 8 bp overlap
KLF2 3 datasets
Motif DE_24h DE_24h-KLF2_MA1515.2 8 bp overlap
Motif DE_36h DE_36h-KLF2_MA1515.2 8 bp overlap
Motif DE_48h DE_48h-KLF2_MA1515.2 8 bp overlap
KLF4 3 datasets
Motif DE_24h DE_24h-KLF4_MA0039.5 8 bp overlap
Motif DE_36h DE_36h-KLF4_MA0039.5 8 bp overlap
Motif DE_48h DE_48h-KLF4_MA0039.5 8 bp overlap
KLF5 3 datasets
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
Motif DE_36h DE_36h-KLF5_MA0599.1 10 bp overlap
Motif DE_48h DE_48h-KLF5_MA0599.1 10 bp overlap
NEUROG2 1 dataset
Motif DE_72h DE_72h-NEUROG2_MA1642.2 7 bp overlap
NFATC3 1 dataset
Motif DE_72h DE_72h-NFATC3_MA0625.3 6 bp overlap
NR2C1 1 dataset
Motif DE_72h DE_72h-NR2C1_MA1535.2 6 bp overlap
NR2C2 2 datasets
Motif DE_72h DE_72h-NR2C2_MA0504.2 14 bp overlap
Motif DE_72h DE_72h-NR2C2_MA1536.2 6 bp overlap
NR2F1 1 dataset
Motif DE_72h DE_72h-NR2F1_MA0017.3 12 bp overlap
Nfatc1 1 dataset
Motif DE_72h DE_72h-Nfatc1_MA0624.3 6 bp overlap
Nr1H2 1 dataset
Motif DE_72h DE_72h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_72h DE_72h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_72h DE_72h-Nr1h3_MA2337.1 6 bp overlap
Nr2f6 1 dataset
Motif DE_72h DE_72h-Nr2f6_MA0677.2 13 bp overlap
OTX1 3 datasets
Motif DE_24h DE_24h-OTX1_MA0711.2 6 bp overlap
Motif DE_36h DE_36h-OTX1_MA0711.2 6 bp overlap
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
PITX1 3 datasets
Motif DE_24h DE_24h-PITX1_MA0682.3 6 bp overlap
Motif DE_36h DE_36h-PITX1_MA0682.3 6 bp overlap
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
PITX3 3 datasets
Motif DE_24h DE_24h-PITX3_MA0714.2 6 bp overlap
Motif DE_36h DE_36h-PITX3_MA0714.2 6 bp overlap
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 320 bp overlap
PPARA::RXRA 1 dataset
Motif DE_72h DE_72h-PPARARXRA_MA1148.2 17 bp overlap
PPARD 1 dataset
Motif DE_72h DE_72h-PPARD_MA1550.2 14 bp overlap
PRDM9 1 dataset
Motif DE_36h DE_36h-PRDM9_MA1723.2 20 bp overlap
Pparg::Rxra 1 dataset
Motif DE_72h DE_72h-PpargRxra_MA0065.3 13 bp overlap
Ptf1A 1 dataset
Motif DE_48h DE_48h-Ptf1A_MA1620.2 8 bp overlap
RHOXF1 3 datasets
Motif DE_24h DE_24h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_36h DE_36h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
RXRB 1 dataset
Motif DE_72h DE_72h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_72h DE_72h-RXRG_MA0856.1 14 bp overlap
Rarg 1 dataset
Motif DE_72h DE_72h-Rarg_MA0860.1 17 bp overlap
Rxra 1 dataset
Motif DE_72h DE_72h-Rxra_MA0512.2 14 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 319 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 320 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 355 bp overlap
SNAI1 3 datasets
Motif DE_24h DE_24h-SNAI1_MA1558.2 7 bp overlap
Motif DE_36h DE_36h-SNAI1_MA1558.2 7 bp overlap
Motif DE_48h DE_48h-SNAI1_MA1558.2 7 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 307 bp overlap
SP1 2 datasets
Motif DE_36h DE_36h-SP1_MA0079.5 9 bp overlap
Motif DE_72h DE_72h-SP1_MA0079.5 9 bp overlap
SP4 1 dataset
Motif DE_72h DE_72h-SP4_MA0685.2 9 bp overlap
SP5 2 datasets
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
TBR1 1 dataset
Motif DE_36h DE_36h-TBR1_MA0802.2 9 bp overlap
TBX18 1 dataset
Motif DE_36h DE_36h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_36h DE_36h-TBX2_MA0688.2 9 bp overlap
TBX3 1 dataset
Motif DE_36h DE_36h-TBX3_MA1566.3 9 bp overlap
TCF12 3 datasets
Motif DE_24h DE_24h-TCF12_MA1648.2 7 bp overlap
Motif DE_36h DE_36h-TCF12_MA1648.2 7 bp overlap
Motif DE_48h DE_48h-TCF12_MA1648.2 7 bp overlap
TCF3 3 datasets
Motif DE_24h DE_24h-TCF3_MA0522.4 7 bp overlap
Motif DE_36h DE_36h-TCF3_MA0522.4 7 bp overlap
Motif DE_48h DE_48h-TCF3_MA0522.4 7 bp overlap
THAP1 3 datasets
Motif DE_24h DE_24h-THAP1_MA0597.3 8 bp overlap
Motif DE_36h DE_36h-THAP1_MA0597.3 8 bp overlap
Motif DE_48h DE_48h-THAP1_MA0597.3 8 bp overlap
THRA 1 dataset
Motif DE_72h DE_72h-THRA_MA1969.2 18 bp overlap
Tbx6 1 dataset
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
Tfcp2l1 1 dataset
Motif DE_72h DE_72h-Tfcp2l1_MA0145.2 14 bp overlap
Wt1 3 datasets
Motif DE_24h DE_24h-Wt1_MA1627.2 10 bp overlap
Motif DE_36h DE_36h-Wt1_MA1627.2 10 bp overlap
Motif DE_48h DE_48h-Wt1_MA1627.2 10 bp overlap
ZBTB24 1 dataset
Motif DE_72h DE_72h-ZBTB24_MA2330.1 10 bp overlap
ZBTB32 3 datasets
Motif DE_24h DE_24h-ZBTB32_MA1580.1 10 bp overlap
Motif DE_48h DE_48h-ZBTB32_MA1580.1 10 bp overlap
Motif DE_72h DE_72h-ZBTB32_MA1580.1 10 bp overlap
ZEB1 4 datasets
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
Motif DE_36h DE_36h-ZEB1_MA0103.4 6 bp overlap
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
ZFP14 1 dataset
Motif DE_72h DE_72h-ZFP14_MA1972.1 15 bp overlap
ZKSCAN5 1 dataset
Motif DE_72h DE_72h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF148 4 datasets
Motif DE_24h DE_24h-ZNF148_MA1653.2 10 bp overlap
Motif DE_36h DE_36h-ZNF148_MA1653.2 10 bp overlap
Motif DE_48h DE_48h-ZNF148_MA1653.2 10 bp overlap
Motif DE_72h DE_72h-ZNF148_MA1653.2 10 bp overlap
ZNF213 1 dataset
Motif DE_72h DE_72h-ZNF213_MA2121.1 12 bp overlap
ZNF257 1 dataset
Motif DE_72h DE_72h-ZNF257_MA1710.2 10 bp overlap
ZNF263 1 dataset
Motif DE_72h DE_72h-ZNF263_MA0528.3 7 bp overlap
ZNF281 5 datasets
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap
Motif DE_36h DE_36h-ZNF281_MA1630.3 10 bp overlap
Motif DE_48h DE_48h-ZNF281_MA1630.3 10 bp overlap
Motif DE_72h DE_72h-ZNF281_MA1630.3 10 bp overlap
Motif DE_72h DE_72h-ZNF281_MA1630.3 10 bp overlap
ZNF324 1 dataset
Motif DE_72h DE_72h-ZNF324_MA1977.2 14 bp overlap
ZNF410 3 datasets
Motif DE_24h DE_24h-ZNF410_MA0752.2 16 bp overlap
Motif DE_36h DE_36h-ZNF410_MA0752.2 16 bp overlap
Motif DE_48h DE_48h-ZNF410_MA0752.2 16 bp overlap
ZNF460 1 dataset
Motif DE_72h DE_72h-ZNF460_MA1596.1 16 bp overlap
ZNF610 1 dataset
Motif DE_36h DE_36h-ZNF610_MA1713.2 10 bp overlap
ZNF680 1 dataset
Motif DE_72h DE_72h-ZNF680_MA1729.2 11 bp overlap
ZNF701 1 dataset
Motif DE_72h DE_72h-ZNF701_MA1987.2 17 bp overlap
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