chr9 : 2,755,336 2,755,838
502 bp 59 TFs 0 linked genes
This 502 bp open chromatin element has no linked target genes and is bound by 59 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:2,750,336 – 2,760,838
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
59 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 259 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 141 bp overlap
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 152 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 317 bp overlap
CTCF 2 datasets
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 309 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 210 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 99 bp overlap
ChIP BLaER1 ENCFF274GAT 101 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 252 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 502 bp overlap
FLI1 4 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 327 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 278 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 315 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 349 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 448 bp overlap
ChIP DE DE-FOXA2-2 502 bp overlap
GATA1 4 datasets
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 87 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 253 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 168 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 183 bp overlap
GATA2 1 dataset
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 148 bp overlap
GATA3 1 dataset
ChIP BE2C GSE65664.GATA3.BE2C 287 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 459 bp overlap
ChIP DE DE-GATA4-2 502 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 361 bp overlap
ChIP foregut GSE117136.GATA4.foregut 380 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 248 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 389 bp overlap
ChIP DE DE-GATA6-2 502 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 463 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 502 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 469 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 442 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 458 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 460 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 416 bp overlap
ChIP foregut GSE117136.GATA6.foregut 329 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 317 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 290 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 192 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 209 bp overlap
MEF2D 4 datasets
ChIP K-562 ENCSR647ZXA.MEF2D.K-562 236 bp overlap
ChIP K562 ENCFF392LDT 421 bp overlap
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 295 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 273 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 263 bp overlap
ChIP K562 ENCFF320GSD 145 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 262 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 230 bp overlap
MYB 1 dataset
ChIP THP-1 GSE90769.MYB.THP-1 235 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 434 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 336 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 190 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 133 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 309 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 275 bp overlap
ChIP hESC GSE18292.NANOG.hESC 141 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 368 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 233 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 325 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 294 bp overlap
NFE2 1 dataset
ChIP K-562 ENCSR000FCC.NFE2.K-562 163 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 303 bp overlap
PBX2 2 datasets
ChIP K-562 ENCSR263DFP.PBX2.K-562 276 bp overlap
ChIP K562 ENCFF286KMN 308 bp overlap
POU3F1 1 dataset
ChIP SKM-1_D2 GSE93706.POU3F1.SKM-1_D2 311 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 306 bp overlap
PRDM14 1 dataset
ChIP hESC GSE22767.PRDM14.hESC 187 bp overlap
RAD21 3 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 438 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 292 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 201 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 319 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 232 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 225 bp overlap
REST 3 datasets
ChIP H1 ENCFF429RUE 245 bp overlap
ChIP K-562 ENCSR137ZMQ.REST.K-562 271 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 132 bp overlap
RXR 1 dataset
ChIP LS180_125 GSE31939.RXR.LS180_125 118 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 451 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 439 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 289 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 448 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 502 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 480 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 191 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 247 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 359 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 316 bp overlap
SOX2 1 dataset
ChIP hESC GSE18292.SOX2.hESC 136 bp overlap
SOX6 1 dataset
ChIP K-562 ENCSR788RSW.SOX6.K-562 288 bp overlap
TAL1 1 dataset
ChIP CD34 GSE52924.TAL1.CD34 93 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 169 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 239 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 293 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 293 bp overlap
TRIM28 1 dataset
ChIP HEK293 ENCFF582MWI 450 bp overlap
ZFP36 1 dataset
ChIP K-562 ENCSR776CYN.ZFP36.K-562 169 bp overlap
ZNF264 2 datasets
ChIP HEK293 GSE76494.ZNF264.HEK293 323 bp overlap
ChIP HepG2 ENCFF453WJV 402 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 467 bp overlap
ZSCAN32 1 dataset
ChIP K562 ENCFF960API 206 bp overlap
Zic2 1 dataset
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap