chr1 : 172,885,256 – 172,885,646
390 bp 55 TFs 1 linked gene
This 390 bp open chromatin element is linked to AIMP1P2 and is bound by 55 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
AIMP1P2 611 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:172,880,256 – 172,890,646
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
55 transcription factors
Source
Cell type
ARID1A 2 datasets
ChIP 12Z GSE129781.ARID1A.12Z 275 bp overlap
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 81 bp overlap
ATF3 2 datasets
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 125 bp overlap
ChIP HCT-116_DMSO GSE74355.ATF3.HCT-116_DMSO 99 bp overlap
BRD4 10 datasets
ChIP HCC1395 GSE63581.BRD4.HCC1395 311 bp overlap
ChIP HCT-116 GSE73319.BRD4.HCT-116 171 bp overlap
ChIP HeLa GSE151038.BRD4.HeLa 224 bp overlap
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 151 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 390 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 390 bp overlap
ChIP MDA-MB-231_JQ1-neg_L GSE136151.BRD4.MDA-MB-231_JQ1-neg_L 390 bp overlap
ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 362 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 214 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 214 bp overlap
BRD9 2 datasets
ChIP MDA-MB-231_DMSO GSE116879.BRD9.MDA-MB-231_DMSO 305 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD9.MDA-MB-231_MGSK2801 278 bp overlap
CBX3 1 dataset
ChIP HCT-116 ENCSR000BUH.CBX3.HCT-116 126 bp overlap
CDK9 1 dataset
ChIP HCT-116_KAP1-KO GSE132705.CDK9.HCT-116_KAP1-KO 62 bp overlap
CEBPB 1 dataset
ChIP HeLa-S3 ENCFF722WEG 209 bp overlap
DAXX 1 dataset
ChIP PC-3 GSE68647.DAXX.PC-3 126 bp overlap
ELF3 1 dataset
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 279 bp overlap
EP300 3 datasets
ChIP HeLa-S3 ENCSR000ECV.EP300.HeLa-S3 172 bp overlap
ChIP SK-N-SH ENCFF451CNG 250 bp overlap
ChIP SK-N-SH ENCSR000BUA.EP300.SK-N-SH 181 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 161 bp overlap
FOS 1 dataset
ChIP HeLa-S3 ENCSR000EZE.FOS.HeLa-S3 100 bp overlap
FOSL1 4 datasets
ChIP BT-549 GSE46166.FOSL1.BT-549 373 bp overlap
ChIP BT-549 GSE112961.FOSL1.BT-549 115 bp overlap
ChIP HCT-116 ENCSR000BTE.FOSL1.HCT-116 187 bp overlap
ChIP HCT116 ENCFF540ZXN 263 bp overlap
FOSL2 2 datasets
ChIP SK-N-SH ENCFF127ZDW 285 bp overlap
ChIP SK-N-SH ENCSR000BVB.FOSL2.SK-N-SH 111 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 390 bp overlap
ChIP DE DE-FOXA2-2 350 bp overlap
GATA1 1 dataset
ChIP K-562 GSE107726.GATA1.K-562 143 bp overlap
GATA2 1 dataset
ChIP K-562 ENCSR000DKA.GATA2.K-562 253 bp overlap
GATA3 1 dataset
ChIP SK-N-SH ENCFF040SSB 174 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 390 bp overlap
ChIP DE DE-GATA4-2 385 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 387 bp overlap
ChIP DE DE-GATA6-2 374 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 94 bp overlap
JUN 2 datasets
ChIP BT-549 GSE46166.JUN.BT-549 196 bp overlap
ChIP HeLa-S3 ENCSR000EDG.JUN.HeLa-S3 119 bp overlap
JUND 4 datasets
ChIP HCT-116 ENCSR000BSA.JUND.HCT-116 135 bp overlap
ChIP HeLa-S3 ENCSR000EDH.JUND.HeLa-S3 86 bp overlap
ChIP SK-N-SH ENCFF551NEQ 214 bp overlap
ChIP SK-N-SH ENCSR000BSK.JUND.SK-N-SH 127 bp overlap
KMT2C 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 270 bp overlap
MAX 1 dataset
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 153 bp overlap
MED1 1 dataset
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 390 bp overlap
MED26 1 dataset
ChIP HCT-116 GSE121355.MED26.HCT-116 72 bp overlap
NFE2L2 1 dataset
ChIP BEAS-2B_arsenic GSE145834.NFE2L2.BEAS-2B_arsenic 147 bp overlap
NFIC 2 datasets
ChIP SK-N-SH ENCFF965AKM 233 bp overlap
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 219 bp overlap
NR3C1 5 datasets
ChIP BEAS-2B_DEX_IA1 GSE125623.NR3C1.BEAS-2B_DEX_IA1 152 bp overlap
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 312 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 327 bp overlap
ChIP BEAS-2B_shNR3C1_TNF_IA1 GSE125623.NR3C1.BEAS-2B_shNR3C1_TNF_IA1 220 bp overlap
ChIP MDA-MB-231 GSE152203.NR3C1.MDA-MB-231 194 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 116 bp overlap
PDX1 1 dataset
ChIP islet ERP001456.PDX1.islet 69 bp overlap
PGR 1 dataset
ChIP AB32 GSE31129.PGR.AB32 211 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 390 bp overlap
PRDM1 2 datasets
ChIP HeLa-S3 ENCFF893HDJ 156 bp overlap
ChIP HeLa-S3 ENCSR000ECY.PRDM1.HeLa-S3 135 bp overlap
RAD21 2 datasets
ChIP HeLa-S3 ENCFF775CHI 135 bp overlap
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 368 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 178 bp overlap
RXRA 2 datasets
ChIP SK-N-SH ENCFF893DLM 248 bp overlap
ChIP SK-N-SH ENCSR000BVG.RXRA.SK-N-SH 130 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 329 bp overlap
SMAD3-HIF1A 1 dataset
ChIP PC-3_hypoxia GSE106305.SMAD3-HIF1A.PC-3_hypoxia 51 bp overlap
SMARCA2 1 dataset
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 140 bp overlap
SMARCA4 11 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 118 bp overlap
ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 167 bp overlap
ChIP A-549_AG15720 GSE132290.SMARCA4.A-549_AG15720 51 bp overlap
ChIP A-549_AG15721 GSE132290.SMARCA4.A-549_AG15721 171 bp overlap
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 129 bp overlap
ChIP A-549_AG15724 GSE132290.SMARCA4.A-549_AG15724 118 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 109 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 180 bp overlap
ChIP NPC_K755R-pos GSE122631.SMARCA4.NPC_K755R-pos 151 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 330 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 216 bp overlap
SMARCC1 1 dataset
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 114 bp overlap
SP1 1 dataset
ChIP HCT-116 ENCSR000BSF.SP1.HCT-116 181 bp overlap
STAT3 5 datasets
ChIP HCC1187 GSE152203.STAT3.HCC1187 172 bp overlap
ChIP HeLa-S3 ENCSR000EDC.STAT3.HeLa-S3 156 bp overlap
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 104 bp overlap
ChIP MDA-MB-231 GSE152203.STAT3.MDA-MB-231 206 bp overlap
ChIP MDA-MB-231_EtOH GSE85579.STAT3.MDA-MB-231_EtOH 236 bp overlap
SUPT5H 1 dataset
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 390 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 256 bp overlap
TCF7L2 2 datasets
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 105 bp overlap
ChIP LNCaP GSE51621.TCF7L2.LNCaP 119 bp overlap
TEAD1 1 dataset
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 146 bp overlap
TEAD4 1 dataset
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 264 bp overlap
ZEB1 1 dataset
ChIP NCI-H1975 GSE106896.ZEB1.NCI-H1975 167 bp overlap
ZMYND8 1 dataset
ChIP MDA-MB-231 GSE108833.ZMYND8.MDA-MB-231 207 bp overlap
ZNF680 1 dataset
ChIP HEK293 GSE76494.ZNF680.HEK293 230 bp overlap
ZNF823 1 dataset
ChIP HEK293T GSE78099.ZNF823.HEK293T 126 bp overlap
ZNF92 1 dataset
ChIP retina_pigment GSE60024.ZNF92.retina_pigment 147 bp overlap
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