chr1 : 170,261,445 170,261,917
472 bp 54 TFs 0 linked genes
This 472 bp open chromatin element has no linked target genes and is bound by 54 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:170,256,445 – 170,266,917
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
54 transcription factors
Source
Cell type
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 219 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 352 bp overlap
CBFB 1 dataset
ChIP SaOS-2 GSE76937.CBFB.SaOS-2 216 bp overlap
CEBPB 1 dataset
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 383 bp overlap
CUX1 1 dataset
ChIP MCF-7 ENCSR017CEO.CUX1.MCF-7 159 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 260 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 227 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 207 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF451CNG 220 bp overlap
ChIP SK-N-SH ENCSR000BUA.EP300.SK-N-SH 171 bp overlap
ESRRA 2 datasets
Motif DE_48h DE_48h-ESRRA_MA0592.4 9 bp overlap
Motif DE_60h DE_60h-ESRRA_MA0592.4 9 bp overlap
ESRRB 2 datasets
Motif DE_48h DE_48h-ESRRB_MA0141.4 10 bp overlap
Motif DE_60h DE_60h-ESRRB_MA0141.4 10 bp overlap
EZH2 1 dataset
ChIP hepatocyte ENCFF118DKH 337 bp overlap
FLI1 1 dataset
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 158 bp overlap
FOSL2 2 datasets
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 279 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 238 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 472 bp overlap
FOXA2 5 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 272 bp overlap
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 296 bp overlap
ChIP DE DE-FOXA2-1 472 bp overlap
ChIP DE DE-FOXA2-2 472 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 429 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 223 bp overlap
GATA2 3 datasets
ChIP ESF GSE108408.GATA2.ESF 162 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 191 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 82 bp overlap
GATA3 1 dataset
ChIP SK-N-SH ENCFF040SSB 103 bp overlap
GATA4 7 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 389 bp overlap
ChIP DE DE-GATA4-1 406 bp overlap
ChIP DE DE-GATA4-2 471 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 304 bp overlap
ChIP foregut GSE117136.GATA4.foregut 433 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 472 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 472 bp overlap
GATA6 10 datasets
ChIP AGS GSE51705.GATA6.AGS 288 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 243 bp overlap
ChIP DE DE-GATA6-1 375 bp overlap
ChIP DE DE-GATA6-2 464 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 379 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 320 bp overlap
ChIP foregut GSE117136.GATA6.foregut 419 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 472 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 342 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 365 bp overlap
JUND 2 datasets
ChIP SK-N-SH ENCFF551NEQ 188 bp overlap
ChIP SK-N-SH ENCSR000BSK.JUND.SK-N-SH 142 bp overlap
MAX 1 dataset
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 141 bp overlap
MED 1 dataset
ChIP SEM GSE83671.MED.SEM 268 bp overlap
MED1 3 datasets
ChIP hMSC-TERT4_D14 GSE104537.MED1.hMSC-TERT4_D14 116 bp overlap
ChIP hMSC-TERT4_adipocyte-D3 GSE113253.MED1.hMSC-TERT4_adipocyte-D3 160 bp overlap
ChIP hMSC-TERT4_adipocyte-D7 GSE113253.MED1.hMSC-TERT4_adipocyte-D7 116 bp overlap
MED12 1 dataset
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 78 bp overlap
MEIS1 1 dataset
ChIP A-673 GSE109477.MEIS1.A-673 78 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 232 bp overlap
MYB 1 dataset
ChIP SEM GSE117864.MYB.SEM 161 bp overlap
MYCN 5 datasets
ChIP SH-EP_MYCNER_plusOHT GSE111905.MYCN.SH-EP_MYCNER_plusOHT 88 bp overlap
ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 145 bp overlap
ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 104 bp overlap
ChIP SHEP-21N_24h GSE80151.MYCN.SHEP-21N_24h 105 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.MYCN.SHEP-21N_DOX_0H 104 bp overlap
NEUROD1 3 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 438 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 429 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 391 bp overlap
NFIC 1 dataset
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 135 bp overlap
NR5A1 2 datasets
Motif DE_48h DE_48h-NR5A1_MA1540.3 12 bp overlap
Motif DE_60h DE_60h-NR5A1_MA1540.3 12 bp overlap
Nr5A2 2 datasets
Motif DE_48h DE_48h-Nr5A2_MA0505.3 9 bp overlap
Motif DE_60h DE_60h-Nr5A2_MA0505.3 9 bp overlap
ONECUT1 2 datasets
ChIP H9 ERP004206.ONECUT1.H9 131 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 387 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 226 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 472 bp overlap
POLR2A 1 dataset
ChIP SK-N-SH ENCFF683PFH 107 bp overlap
PPARG 2 datasets
Motif DE_48h DE_48h-PPARG_MA0066.2 19 bp overlap
Motif DE_60h DE_60h-PPARG_MA0066.2 19 bp overlap
RUNX2 1 dataset
ChIP SaOS-2 GSE76937.RUNX2.SaOS-2 163 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 472 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 308 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 314 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 137 bp overlap
SMARCA2 8 datasets
ChIP NPC_AM GSE122631.SMARCA2.NPC_AM 221 bp overlap
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 237 bp overlap
ChIP NPC_K755R-pos_ab GSE122631.SMARCA2.NPC_K755R-pos_ab 113 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 367 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 412 bp overlap
ChIP NPC_R1159Q GSE122631.SMARCA2.NPC_R1159Q 266 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 443 bp overlap
ChIP NPC_R1159Q_ab GSE122631.SMARCA2.NPC_R1159Q_ab 257 bp overlap
SMARCA4 4 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 124 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 341 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 391 bp overlap
ChIP NPC_R1159Q GSE122631.SMARCA4.NPC_R1159Q 175 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 309 bp overlap
SS18 1 dataset
ChIP SYO-1_shSSX GSE108025.SS18.SYO-1_shSSX 218 bp overlap
STAT3 1 dataset
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 205 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 224 bp overlap
TEAD4 1 dataset
ChIP SK-N-SH ENCSR000BUQ.TEAD4.SK-N-SH 147 bp overlap
TOX 1 dataset
ChIP SK-N-SH ENCFF977TQV 92 bp overlap
TWIST1 7 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 170 bp overlap
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 417 bp overlap
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 276 bp overlap
ChIP SHEP-21N_24h GSE80151.TWIST1.SHEP-21N_24h 358 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.TWIST1.SHEP-21N_DOX_0H 417 bp overlap
ChIP SHEP-21N_DOX_24H GSE80151.TWIST1.SHEP-21N_DOX_24H 298 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 170 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 338 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 185 bp overlap