chr6 : 152,296,303 – 152,296,938
635 bp 80 TFs 1 linked gene
This 635 bp open chromatin element is linked to SYNE1 and is bound by 80 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SYNE1 5.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:152,291,303 – 152,301,938
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
80 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_DHT GSE125245.AR.LNCaP_DHT 107 bp overlap
ARID3A 1 dataset
ChIP HepG2 ENCFF341DES 174 bp overlap
ARID4A 1 dataset
ChIP HepG2 ENCFF142DIE 157 bp overlap
ARID5B 1 dataset
ChIP HepG2 ENCFF964FWK 67 bp overlap
ATF2 1 dataset
ChIP HepG2 ENCFF578ZBI 307 bp overlap
CEBPA 2 datasets
ChIP Hep-G2 ERP000209.CEBPA.Hep-G2 142 bp overlap
ChIP HepG2 ENCFF175DFS 266 bp overlap
CEBPB 3 datasets
ChIP Hep-G2 ENCSR000EEX.CEBPB.Hep-G2 146 bp overlap
ChIP Hep-G2 ENCSR000BQI.CEBPB.Hep-G2 103 bp overlap
ChIP HepG2 ENCFF536NTI 218 bp overlap
CEBPD 1 dataset
ChIP HepG2 ENCFF345JDB 135 bp overlap
CEBPG 1 dataset
ChIP HepG2 ENCFF503XBC 287 bp overlap
Dmrt1 1 dataset
Motif DE_12h DE_12h-Dmrt1_MA1603.2 9 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 182 bp overlap
EHMT2 1 dataset
ChIP HepG2 ENCFF004KYI 180 bp overlap
ERF 1 dataset
ChIP HepG2 ENCFF647PIT 191 bp overlap
ERF::HOXB13 1 dataset
Motif DE_12h DE_12h-ERFHOXB13_MA1937.2 13 bp overlap
ESR1_pS118 2 datasets
ChIP MCF-7_E2_sc GSE117569.ESR1_pS118.MCF-7_E2_sc 511 bp overlap
ChIP MCF-7_E2_sc GSE117569.ESR1_pS118.MCF-7_E2_sc 70 bp overlap
ETV2::DRGX 1 dataset
Motif DE_12h DE_12h-ETV2DRGX_MA1940.2 12 bp overlap
ETV5::HOXA2 1 dataset
Motif DE_12h DE_12h-ETV5HOXA2_MA1948.2 12 bp overlap
FLI1::DRGX 1 dataset
Motif DE_12h DE_12h-FLI1DRGX_MA1949.2 14 bp overlap
FOXA1 5 datasets
ChIP HepG2 ENCFF207NVJ 65 bp overlap
ChIP HepG2 ENCFF361KNY 85 bp overlap
ChIP HepG2 ENCFF740VZW 64 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 368 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 202 bp overlap
FOXA2 1 dataset
ChIP HepG2 ENCFF570ABM 84 bp overlap
FOXA3 1 dataset
ChIP HepG2 ENCFF005KGL 78 bp overlap
GATAD2A 1 dataset
ChIP HepG2 ENCFF252XNH 316 bp overlap
HDAC2 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 143 bp overlap
HLF 1 dataset
Motif DE_12h DE_12h-HLF_MA0043.4 9 bp overlap
HNF1A 1 dataset
ChIP HepG2 ENCFF540TRC 100 bp overlap
HNF1B 1 dataset
ChIP H9 ERP004206.HNF1B.H9 60 bp overlap
HOXB4 1 dataset
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
HOXD12::ELK1 1 dataset
Motif DE_12h DE_12h-HOXD12ELK1_MA1958.2 13 bp overlap
HOXD4 1 dataset
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
Hand1 1 dataset
Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap
Hmx2 1 dataset
Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
ISL2 1 dataset
ChIP HepG2 ENCFF742RIP 129 bp overlap
KDM1A 2 datasets
ChIP HepG2 ENCFF240UWG 378 bp overlap
ChIP HepG2 ENCFF240UWG 161 bp overlap
KMT2A 1 dataset
ChIP MOLM-13_CBS79-KO GSE114981.KMT2A.MOLM-13_CBS79-KO 94 bp overlap
LIN54 1 dataset
Motif DE_12h DE_12h-LIN54_MA0619.2 7 bp overlap
MAX 1 dataset
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 113 bp overlap
MED1 1 dataset
ChIP VCaP_R1881 GSE148358.MED1.VCaP_R1881 303 bp overlap
MED13 1 dataset
ChIP HepG2 ENCFF143ZBX 129 bp overlap
MEIS2 1 dataset
Motif DE_12h DE_12h-MEIS2_MA1640.2 9 bp overlap
MIER2 1 dataset
ChIP HepG2 ENCFF997QIX 106 bp overlap
MIXL1 1 dataset
ChIP HepG2 ENCFF817YFO 138 bp overlap
MYOD1 1 dataset
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 215 bp overlap
MYPOP 1 dataset
ChIP HepG2 ENCFF176TQL 273 bp overlap
NFIL3 1 dataset
Motif DE_12h DE_12h-NFIL3_MA0025.3 9 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 3 datasets
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
ChIP HepG2 ENCFF944PRH 163 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
ONECUT1 1 dataset
ChIP HepG2 ENCFF243FIR 107 bp overlap
PBX2 1 dataset
Motif DE_12h DE_12h-PBX2_MA1113.3 9 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 151 bp overlap
POU6F1 1 dataset
Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap
PPARG 1 dataset
ChIP Hep-G2 ENCSR130VQL.PPARG.Hep-G2 174 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 167 bp overlap
RARA::RXRA 1 dataset
Motif DE_12h DE_12h-RARARXRA_MA0159.1 17 bp overlap
REST 20 datasets
ChIP GM12878 ENCSR000BQS.REST.GM12878 124 bp overlap
ChIP GM23338 ENCFF024TCL 243 bp overlap
ChIP GM23338 ENCSR871KYB.REST.GM23338 165 bp overlap
ChIP H1 ENCFF429RUE 82 bp overlap
ChIP HEK293 ENCFF073DOT 171 bp overlap
ChIP HEK293 ENCSR896UBV.REST.HEK293 275 bp overlap
ChIP Hep-G2 ENCSR000BOT.REST.Hep-G2 251 bp overlap
ChIP Hep-G2 ENCSR000BJL.REST.Hep-G2 154 bp overlap
ChIP HepG2 ENCFF122AWR 187 bp overlap
ChIP Ishikawa ENCFF456OHV 289 bp overlap
ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 185 bp overlap
ChIP K-562 ENCSR000BMW.REST.K-562 94 bp overlap
ChIP MCF-7 ENCSR000BSP.REST.MCF-7 155 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 158 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 204 bp overlap
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 292 bp overlap
ChIP liver ENCFF240FWT 325 bp overlap
ChIP liver ENCFF577AZT 363 bp overlap
ChIP liver ENCSR893QWP.REST.liver 277 bp overlap
ChIP liver ENCSR867WPH.REST.liver 231 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 83 bp overlap
SIX2 1 dataset
ChIP HEK GSE73865.SIX2.HEK 281 bp overlap
SOX8 1 dataset
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 56 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Spz1 1 dataset
Motif DE_12h DE_12h-Spz1_MA0111.1 11 bp overlap
TEAD2 1 dataset
ChIP HepG2 ENCFF261IHC 155 bp overlap
TFE3 1 dataset
ChIP Hep-G2 ENCSR589SNT.TFE3.Hep-G2 131 bp overlap
THRA 1 dataset
ChIP HepG2 ENCFF025KMX 84 bp overlap
TSC22D2 1 dataset
ChIP HepG2 ENCFF869LPB 166 bp overlap
YY1 2 datasets
ChIP liver ENCFF400MBC 185 bp overlap
ChIP liver ENCFF515BWJ 97 bp overlap
ZBTB32 1 dataset
Motif DE_12h DE_12h-ZBTB32_MA1580.1 10 bp overlap
ZFP64 1 dataset
ChIP Hep-G2 ENCSR487CPI.ZFP64.Hep-G2 152 bp overlap
ZFY 3 datasets
ChIP Hep-G2 ENCSR949OEV.ZFY.Hep-G2 177 bp overlap
ChIP HepG2 ENCFF106ELT 337 bp overlap
ChIP HepG2 ENCFF106ELT 130 bp overlap
ZNF18 1 dataset
ChIP HepG2 ENCFF479ZIQ 239 bp overlap
ZNF263 1 dataset
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
ZNF354C 1 dataset
Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap
ZNF547 1 dataset
Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap
ZNF574 1 dataset
ChIP HepG2 ENCFF206MMY 185 bp overlap
ZNF615 1 dataset
ChIP HepG2 ENCFF440YLL 475 bp overlap
ZNF644 1 dataset
ChIP HepG2 ENCFF352VGJ 317 bp overlap
ZSCAN29 1 dataset
ChIP HepG2 ENCFF212SBM 306 bp overlap
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