chr1 : 115,650,914 – 115,651,221
307 bp 63 TFs 1 linked gene
This 307 bp open chromatin element is linked to VANGL1 and is bound by 63 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
VANGL1 8.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:115,645,914 – 115,656,221
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
63 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 105 bp overlap
ChIP K562 ENCFF938UXQ 249 bp overlap
ATF4 1 dataset
ChIP K-562 ENCSR145TSJ.ATF4.K-562 180 bp overlap
BRD3 3 datasets
ChIP H-1_DE GSE126661.BRD3.H-1_DE 307 bp overlap
ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 307 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD3.K-562_DMSO-IFNG 204 bp overlap
BRD4 4 datasets
ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 303 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 203 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 233 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 57 bp overlap
CBFA2T3 1 dataset
ChIP K562 ENCFF673OEZ 195 bp overlap
CEBPB 7 datasets
ChIP K-562 ENCSR000EHE.CEBPB.K-562 193 bp overlap
ChIP K-562 ENCSR000BRQ.CEBPB.K-562 144 bp overlap
ChIP K562 ENCFF189VBN 190 bp overlap
ChIP K562 ENCFF194QGF 214 bp overlap
ChIP K562 ENCFF584CTB 307 bp overlap
ChIP MCF-7 ENCFF772ZTQ 214 bp overlap
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 128 bp overlap
CTCF 1 dataset
ChIP MCF-7 ENCFF414SZG 191 bp overlap
EP300 1 dataset
ChIP K-562 ENCSR000EGE.EP300.K-562 119 bp overlap
ESR1 8 datasets
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 210 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 307 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 299 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 234 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 231 bp overlap
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 307 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 233 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 162 bp overlap
GATA1 4 datasets
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 84 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 102 bp overlap
ChIP erythroblast ENCFF867JAR 307 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 307 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-1 161 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 85 bp overlap
ChIP DE DE-GATA6-2 121 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 213 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 258 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 307 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 268 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 265 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 288 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 128 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 86 bp overlap
GRHL2 3 datasets
ChIP MCF-7 GSE109820.GRHL2.MCF-7 236 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 208 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 293 bp overlap
GTF2E2 1 dataset
ChIP K562 ENCFF741URT 148 bp overlap
HDAC2 2 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 283 bp overlap
ChIP RH4_DMSO-6H_bioMerck GSE116344.HDAC2.RH4_DMSO-6H_bioMerck 230 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR563YDA.HDGF.K-562 295 bp overlap
HOXB8 1 dataset
ChIP K-562 GSE121208.HOXB8.K-562 181 bp overlap
IKZF1 3 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 307 bp overlap
ChIP K562 ENCFF348IBL 258 bp overlap
ChIP K562 ENCFF771OHZ 221 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 307 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 307 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 307 bp overlap
JUND 1 dataset
ChIP K-562 ENCSR000EGN.JUND.K-562 118 bp overlap
KDM1A 1 dataset
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 177 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 133 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 192 bp overlap
ChIP K562 ENCFF320GSD 147 bp overlap
MTA2 1 dataset
ChIP K-562 ENCSR411UYA.MTA2.K-562 246 bp overlap
MTA3 2 datasets
ChIP K-562 ENCSR180NCY.MTA3.K-562 243 bp overlap
ChIP K-562 ENCSR914NEI.MTA3.K-562 235 bp overlap
MYC 1 dataset
ChIP K-562 ENCSR000EGJ.MYC.K-562 71 bp overlap
NBN 1 dataset
ChIP K-562 ENCSR085QEV.NBN.K-562 299 bp overlap
NELFA 1 dataset
ChIP K-562_HS GSE112379.NELFA.K-562_HS 175 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 152 bp overlap
NFRKB 1 dataset
ChIP K-562 ENCSR657EOF.NFRKB.K-562 247 bp overlap
NR2F1 1 dataset
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 257 bp overlap
NR2F2 1 dataset
ChIP MCF-7 ENCSR000BUY.NR2F2.MCF-7 147 bp overlap
NR3C1 1 dataset
ChIP breast_tumor_Male_15 GSE104399.NR3C1.breast_tumor_Male_15 218 bp overlap
NRIP1 1 dataset
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 159 bp overlap
PBX2 2 datasets
ChIP K-562 ENCSR263DFP.PBX2.K-562 184 bp overlap
ChIP K562 ENCFF286KMN 161 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 132 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 157 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 165 bp overlap
PGR 1 dataset
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 217 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 104 bp overlap
PKNOX1 4 datasets
ChIP HEK293T ENCFF174WDB 194 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 112 bp overlap
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 152 bp overlap
ChIP K562 ENCFF236IUS 102 bp overlap
PRDM10 1 dataset
ChIP K562 ENCFF740YLK 174 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 226 bp overlap
RBBP5 1 dataset
ChIP K562 ENCFF070CVK 307 bp overlap
REST 1 dataset
ChIP K-562 ENCSR000BMW.REST.K-562 124 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 235 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 203 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 307 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 293 bp overlap
SMARCA4 4 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 237 bp overlap
ChIP K562 ENCFF506JCB 205 bp overlap
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 234 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 307 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 307 bp overlap
SMARCC1 1 dataset
ChIP hiPSC GSE124903.SMARCC1.hiPSC 307 bp overlap
SOX6 1 dataset
ChIP K-562 ENCSR788RSW.SOX6.K-562 149 bp overlap
SPDEF 1 dataset
ChIP MCF-7 ENCSR042GSX.SPDEF.MCF-7 281 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 283 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 134 bp overlap
TAL1 2 datasets
ChIP K-562 ENCSR000EHB.TAL1.K-562 127 bp overlap
ChIP K562 ENCFF661CCK 145 bp overlap
TBP 1 dataset
ChIP K562 ENCFF901UYM 307 bp overlap
TCF3 1 dataset
ChIP K-562 ENCSR970OJY.TCF3.K-562 161 bp overlap
ZBTB7A 4 datasets
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 267 bp overlap
ChIP K-562 GSE103445.ZBTB7A.K-562 307 bp overlap
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 102 bp overlap
ChIP K562 ENCFF579ZGM 260 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR322CFO.ZEB2.K-562 101 bp overlap
ZNF121 2 datasets
ChIP HEK293 GSE76494.ZNF121.HEK293 161 bp overlap
ChIP K562 ENCFF314GND 252 bp overlap
ZNF143 1 dataset
ChIP MCF-7 GSE76454.ZNF143.MCF-7 175 bp overlap
ZNF175 1 dataset
ChIP K562 ENCFF497AEJ 307 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 257 bp overlap
ZNF592 1 dataset
ChIP K-562 ENCSR249BHQ.ZNF592.K-562 52 bp overlap
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