chr6 : 89,084,965 89,085,316
351 bp 63 TFs 2 linked genes
This 351 bp open chromatin element is linked to PNRC1 and PNRC1-DT and is bound by 63 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
PNRC1 4.2 kb Proximal Proximity
PNRC1-DT 4.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:89,079,965 – 89,090,316
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
63 transcription factors
Source
Cell type
AGO2 1 dataset
ChIP HepG2 ENCFF252VFI 175 bp overlap
ARID2 3 datasets
ChIP Aska-SS GSE108025.ARID2.Aska-SS 351 bp overlap
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 245 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 351 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 269 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 225 bp overlap
BACH1 3 datasets
ChIP GM12878 ENCFF576UEQ 232 bp overlap
ChIP GM12878 ENCFF576UEQ 274 bp overlap
ChIP GM12878 ENCSR636MKU.BACH1.GM12878 351 bp overlap
BCOR 3 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 228 bp overlap
ChIP WA01 GSE104690.BCOR.WA01 190 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 174 bp overlap
BNC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 53 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 286 bp overlap
BRD4 3 datasets
ChIP MOLM-14_IBET GSE65138.BRD4.MOLM-14_IBET 218 bp overlap
ChIP SUM159PT_100nMtrametinib300nMJQ1_24h GSE87418.BRD4.SUM159PT_100nMtrametinib300nMJQ1_24h 351 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 351 bp overlap
CDK8 1 dataset
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 233 bp overlap
CEBPA 2 datasets
ChIP Hep-G2 ERP000209.CEBPA.Hep-G2 154 bp overlap
ChIP HepG2 ENCFF175DFS 305 bp overlap
CEBPB 10 datasets
ChIP A-549 ENCSR000BUB.CEBPB.A-549 139 bp overlap
ChIP A549 ENCFF235AIY 246 bp overlap
ChIP A549 ENCFF781RLJ 276 bp overlap
ChIP H1 ENCFF871PTR 83 bp overlap
ChIP Hep-G2 ENCSR000BQI.CEBPB.Hep-G2 140 bp overlap
ChIP HepG2 ENCFF074JWB 201 bp overlap
ChIP IMR-90 ENCFF468UGY 251 bp overlap
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 132 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 257 bp overlap
ChIP monocyte_IFNg-LPS GSE120943.CEBPB.monocyte_IFNg-LPS 164 bp overlap
CEBPG 1 dataset
ChIP HepG2 ENCFF503XBC 301 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 203 bp overlap
E2F8 1 dataset
ChIP K-562 ENCSR953DVM.E2F8.K-562 351 bp overlap
ESR1 2 datasets
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 214 bp overlap
ChIP MCF-7_estradiol-Dex_4h GSE99626.ESR1.MCF-7_estradiol-Dex_4h 220 bp overlap
FOS 3 datasets
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 162 bp overlap
ChIP MCF-7 ENCFF282FWZ 125 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 249 bp overlap
FOSL2 5 datasets
ChIP A-549 ENCSR448TVS.FOSL2.A-549 179 bp overlap
ChIP A-549 ENCSR000BQO.FOSL2.A-549 137 bp overlap
ChIP A549 ENCFF195CES 288 bp overlap
ChIP HepG2 ENCFF548CXY 335 bp overlap
ChIP HepG2 ENCFF796NIA 201 bp overlap
FOXK1 1 dataset
ChIP Hep-G2 ENCSR603BJQ.FOXK1.Hep-G2 210 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 261 bp overlap
GATAD2A 1 dataset
ChIP HepG2 ENCFF252XNH 351 bp overlap
HOXA7 1 dataset
ChIP A-549 ENCSR402OYZ.HOXA7.A-549 351 bp overlap
JUN 9 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 323 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 180 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 351 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 351 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 275 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 289 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 341 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 351 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EFA.JUN.endothelial_umbilical-vein 141 bp overlap
JUND 6 datasets
ChIP H1 ENCFF010YXS 241 bp overlap
ChIP H1 ENCFF468JZD 202 bp overlap
ChIP Hep-G2 ENCSR000BGK.JUND.Hep-G2 133 bp overlap
ChIP HepG2 ENCFF869OPW 193 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 208 bp overlap
ChIP liver ENCSR196HGZ.JUND.liver 266 bp overlap
KMT2A 1 dataset
ChIP blood_cord GSE83671.KMT2A.blood_cord 351 bp overlap
MED1 1 dataset
ChIP SUM159PT_100nMtrametinib300nMJQ1_24h GSE87418.MED1.SUM159PT_100nMtrametinib300nMJQ1_24h 337 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 191 bp overlap
MORC2 1 dataset
ChIP HeLa_V5-MORC2-KO-W505A-MORC2-mut GSE95451.MORC2.HeLa_V5-MORC2-KO-W505A-MORC2-mut 155 bp overlap
MTA3 1 dataset
ChIP K-562 ENCSR180NCY.MTA3.K-562 221 bp overlap
MXD4 1 dataset
ChIP Hep-G2 ENCSR441KFW.MXD4.Hep-G2 144 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 241 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 199 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 351 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 351 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 351 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 351 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 351 bp overlap
ChIP hESC GSE20650.NANOG.hESC 269 bp overlap
ChIP hESC GSE18292.NANOG.hESC 101 bp overlap
NEUROD1 2 datasets
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 351 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 136 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 176 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 216 bp overlap
PAF1 2 datasets
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 182 bp overlap
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 95 bp overlap
POLR2A 16 datasets
ChIP H1 ENCFF566JSR 351 bp overlap
ChIP H1 ENCFF566JSR 351 bp overlap
ChIP HeLa-S3 ENCFF455YYQ 252 bp overlap
ChIP HeLa-S3 ENCFF773DNG 351 bp overlap
ChIP HepG2 ENCFF718XAJ 275 bp overlap
ChIP adrenal gland ENCFF892SFM 316 bp overlap
ChIP breast epithelium ENCFF065JSZ 279 bp overlap
ChIP endothelial cell of umbilical vein ENCFF091YHT 208 bp overlap
ChIP erythroblast ENCFF498VMR 231 bp overlap
ChIP esophagus muscularis mucosa ENCFF432ZCY 264 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 138 bp overlap
ChIP gastroesophageal sphincter ENCFF070PCA 92 bp overlap
ChIP gastroesophageal sphincter ENCFF070PCA 151 bp overlap
ChIP spleen ENCFF044PYR 246 bp overlap
ChIP stomach ENCFF820WZN 319 bp overlap
ChIP thyroid gland ENCFF979LRR 331 bp overlap
POLR2G 2 datasets
ChIP HepG2 ENCFF241AEG 307 bp overlap
ChIP HepG2 ENCFF508UTS 301 bp overlap
POU5F1 10 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 115 bp overlap
ChIP H1 ENCFF698ZAP 137 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 349 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 184 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 248 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 140 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 347 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 336 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 183 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 141 bp overlap
RAD21 5 datasets
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-030m-Flavo-000m 277 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-045m-Flavo-000m 351 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-060m-Flavo-000m 229 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-120m-Flavo-000m 173 bp overlap
ChIP liver ENCFF522JHE 300 bp overlap
RBFOX2 2 datasets
ChIP HepG2 ENCFF554DMZ 351 bp overlap
ChIP HepG2 ENCFF939HTZ 351 bp overlap
RBM22 1 dataset
ChIP HepG2 ENCFF292RVQ 290 bp overlap
RELA 2 datasets
ChIP GM12878 ENCSR664POU.RELA.GM12878 70 bp overlap
ChIP aortic-endothelial-cell_IL1B_D49 GSE139377.RELA.aortic-endothelial-cell_IL1B_D49 71 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 143 bp overlap
RPA2_phospho 3 datasets
ChIP HeLa_shASF GSE108172.RPA2_phospho.HeLa_shASF 172 bp overlap
ChIP HeLa_shASF GSE108172.RPA2_phospho.HeLa_shASF 103 bp overlap
ChIP HeLa_shTOP1 GSE108172.RPA2_phospho.HeLa_shTOP1 244 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 270 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 351 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 339 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 351 bp overlap
SMAD3 1 dataset
ChIP Hep-G2 ENCSR005GZH.SMAD3.Hep-G2 252 bp overlap
SMARCA4 6 datasets
ChIP A-549_AG15723 GSE132290.SMARCA4.A-549_AG15723 124 bp overlap
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 265 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 145 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 203 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 253 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 228 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 263 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 241 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 257 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 96 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 204 bp overlap
SPI1 1 dataset
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 139 bp overlap
SREBP2 1 dataset
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 305 bp overlap
SUPT5H 1 dataset
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 146 bp overlap
TARDBP 3 datasets
ChIP GM12878 ENCFF866POT 281 bp overlap
ChIP GM12878 ENCFF866POT 331 bp overlap
ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 351 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 193 bp overlap
TP53 2 datasets
ChIP A549 ENCFF229ULU 248 bp overlap
ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 164 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 213 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 315 bp overlap