chr1 : 112,852,305 – 112,852,574
269 bp 58 TFs 1 linked gene
This 269 bp open chromatin element is linked to LINC01356 and is bound by 58 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01356 2.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:112,847,305 – 112,857,574
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
58 transcription factors
Source
Cell type
AR 3 datasets
ChIP prostate-cancer_PDX_189-4 GSE130408.AR.prostate-cancer_PDX_189-4 175 bp overlap
ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 222 bp overlap
ChIP prostate-cancer_PDX_58 GSE130408.AR.prostate-cancer_PDX_58 99 bp overlap
ARID1A 1 dataset
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 180 bp overlap
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 269 bp overlap
ATF1 1 dataset
ChIP K-562 ENCSR091GVJ.ATF1.K-562 269 bp overlap
BRD2 4 datasets
ChIP HCC1806_BAZ2B_JQ1 GSE116879.BRD2.HCC1806_BAZ2B_JQ1 52 bp overlap
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 58 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 97 bp overlap
ChIP HCC1806_NTsiRNA_JQ1 GSE116879.BRD2.HCC1806_NTsiRNA_JQ1 62 bp overlap
BRD4 7 datasets
ChIP HAP1 GSE108387.BRD4.HAP1 262 bp overlap
ChIP HCC1806 GSE124748.BRD4.HCC1806 99 bp overlap
ChIP HCT-15 GSE73319.BRD4.HCT-15 269 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 140 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 150 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 238 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 50 bp overlap
CDX2 1 dataset
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 62 bp overlap
CREBBP 1 dataset
ChIP retina_Hu33 GSE137311.CREBBP.retina_Hu33 238 bp overlap
CRX 2 datasets
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 251 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 230 bp overlap
CTCF 2 datasets
ChIP GP5D GSE51234.CTCF.GP5D 60 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 181 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 269 bp overlap
E2F1 1 dataset
ChIP MCF-7 ENCSR000EWX.E2F1.MCF-7 269 bp overlap
ESR1 8 datasets
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.ESR1.MCF-7_ARID1A-KO_4-OHT 175 bp overlap
ChIP MCF-7_E2-10min-ERalpha GSE94023.ESR1.MCF-7_E2-10min-ERalpha 144 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 212 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 172 bp overlap
ChIP MCF-7_jc5852 GSE126004.ESR1.MCF-7_jc5852 156 bp overlap
ChIP MCF-7_jc5855 GSE126004.ESR1.MCF-7_jc5855 197 bp overlap
ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 150 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 165 bp overlap
FOXA1 49 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 269 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 269 bp overlap
ChIP 22Rv1_CST GSE123618.FOXA1.22Rv1_CST 240 bp overlap
ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 238 bp overlap
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 269 bp overlap
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 269 bp overlap
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 269 bp overlap
ChIP 22Rv1_R1881 GSE80742.FOXA1.22Rv1_R1881 236 bp overlap
ChIP 22Rv1_TFS GSE123618.FOXA1.22Rv1_TFS 269 bp overlap
ChIP 22Rv1_TFS_Crispr-36 GSE123618.FOXA1.22Rv1_TFS_Crispr-36 202 bp overlap
ChIP 22Rv1_i176m_CST GSE123618.FOXA1.22Rv1_i176m_CST 267 bp overlap
ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 269 bp overlap
ChIP MCF-7 GSE81714.FOXA1.MCF-7 253 bp overlap
ChIP MCF-7 ENCSR126YEB.FOXA1.MCF-7 229 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 129 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 213 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 201 bp overlap
ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 217 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 269 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 225 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 142 bp overlap
ChIP MCF-7_JC4694 GSE126004.FOXA1.MCF-7_JC4694 224 bp overlap
ChIP MCF-7_JC4696 GSE126004.FOXA1.MCF-7_JC4696 223 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 258 bp overlap
ChIP MCF-7_vehicle_ab1 GSE112969.FOXA1.MCF-7_vehicle_ab1 240 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 269 bp overlap
ChIP T-47D GSE72249.FOXA1.T-47D 198 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 269 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 269 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 269 bp overlap
ChIP T-47D_E2 GSE72249.FOXA1.T-47D_E2 180 bp overlap
ChIP T-47D_JC4742 GSE126004.FOXA1.T-47D_JC4742 235 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 254 bp overlap
ChIP T-47D_JC4744 GSE126004.FOXA1.T-47D_JC4744 250 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 207 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 254 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 269 bp overlap
ChIP T-47D_flp-ctrl GSE99479.FOXA1.T-47D_flp-ctrl 242 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 217 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 244 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 269 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 250 bp overlap
ChIP breast-cancer_ENOB-2849 GSE128018.FOXA1.breast-cancer_ENOB-2849 206 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 269 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 215 bp overlap
ChIP breast-cancer_heregulin-ICI GSE101407.FOXA1.breast-cancer_heregulin-ICI 227 bp overlap
ChIP primary-breast-cancer_B1_DSG GSE114737.FOXA1.primary-breast-cancer_B1_DSG 175 bp overlap
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 269 bp overlap
ChIP prostate_P23_T GSE130408.FOXA1.prostate_P23_T 269 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 269 bp overlap
ChIP DE DE-FOXA2-2 269 bp overlap
HDAC1 2 datasets
ChIP MCF-7_parental GSE123284.HDAC1.MCF-7_parental 61 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 269 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR000BMG.HDAC2.K-562 100 bp overlap
HLF 1 dataset
ChIP HepG2 ENCFF854JLR 245 bp overlap
HNF4A 5 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 80 bp overlap
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 61 bp overlap
ChIP GP5D GSE51234.HNF4A.GP5D 145 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 269 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 265 bp overlap
HOXB13 7 datasets
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 83 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.HOXB13.prostate-cancer_PDX_189-4 219 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 85 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 103 bp overlap
ChIP prostate_2480_T GSE130408.HOXB13.prostate_2480_T 269 bp overlap
ChIP prostate_P23_T GSE130408.HOXB13.prostate_P23_T 269 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 222 bp overlap
JUN 1 dataset
ChIP MCF-7_abemaciclib GSE157385.JUN.MCF-7_abemaciclib 265 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 149 bp overlap
KLF5 1 dataset
ChIP KATO-III GSE51705.KLF5.KATO-III 223 bp overlap
MEF2D 2 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 191 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 224 bp overlap
MYC 7 datasets
ChIP GP5D GSE51234.MYC.GP5D 269 bp overlap
ChIP MCF-7 ENCFF542NWJ 181 bp overlap
ChIP MCF-7 ENCSR000DMQ.MYC.MCF-7 122 bp overlap
ChIP U2OS_Doxy GSE77356.MYC.U2OS_Doxy 58 bp overlap
ChIP U2OS_Doxy GSE44672.MYC.U2OS_Doxy 50 bp overlap
ChIP U2OS_HA-OmoMYCwt_Doxy GSE77328.MYC.U2OS_HA-OmoMYCwt_Doxy 104 bp overlap
ChIP U2OS_SHRCTR GSE77356.MYC.U2OS_SHRCTR 80 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 254 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 256 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 205 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 164 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 186 bp overlap
NRF1 1 dataset
ChIP T-47D_HAEGIN2 GSE59935.NRF1.T-47D_HAEGIN2 112 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 269 bp overlap
PGR 1 dataset
ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 53 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 224 bp overlap
POLR2A 1 dataset
ChIP MCF-7 ENCFF164XWP 78 bp overlap
POU1F1 1 dataset
Motif DE_24h DE_24h-POU1F1_MA0784.3 14 bp overlap
POU2F1 5 datasets
ChIP 22Rv1_DHT GSE123565.POU2F1.22Rv1_DHT 269 bp overlap
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 269 bp overlap
Motif DE_24h DE_24h-POU2F1_MA0785.2 9 bp overlap
ChIP T-47D GSE148277.POU2F1.T-47D 269 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 269 bp overlap
POU2F2 1 dataset
Motif DE_24h DE_24h-POU2F2_MA0507.3 13 bp overlap
POU2F3 2 datasets
Motif DE_24h DE_24h-POU2F3_MA0627.3 9 bp overlap
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 269 bp overlap
POU3F1 1 dataset
Motif DE_24h DE_24h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_24h DE_24h-POU3F2_MA0787.1 12 bp overlap
POU3F4 1 dataset
Motif DE_24h DE_24h-POU3F4_MA0789.1 9 bp overlap
POU5F1 3 datasets
Motif DE_24h DE_24h-POU5F1_MA1115.2 7 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 255 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 235 bp overlap
POU5F1B 1 dataset
Motif DE_24h DE_24h-POU5F1B_MA0792.1 9 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 269 bp overlap
RBPJ 2 datasets
ChIP MDA-MB-157_GSI GSE116868.RBPJ.MDA-MB-157_GSI 251 bp overlap
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 101 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 257 bp overlap
RUVBL2 3 datasets
ChIP U2OS GSE130602.RUVBL2.U2OS 269 bp overlap
ChIP U2OS_DMSO GSE130507.RUVBL2.U2OS_DMSO 269 bp overlap
ChIP U2OS_cordycepin GSE130507.RUVBL2.U2OS_cordycepin 269 bp overlap
RXRA 1 dataset
ChIP SK-N-SH ENCFF893DLM 191 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 269 bp overlap
SMARCA4 3 datasets
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 209 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.SMARCA4.MCF-7_ARID1A-KO_4-OHT_clone14 108 bp overlap
ChIP MCF-7_ARID1A-KO_clone14 GSE123284.SMARCA4.MCF-7_ARID1A-KO_clone14 73 bp overlap
SMARCB1 6 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 175 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 86 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.SMARCB1.MCF-7_Fulvestrant 52 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 269 bp overlap
ChIP proliferating-human-fibroblast_ASO_Ctrl GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_Ctrl 222 bp overlap
ChIP proliferating-human-fibroblast_ASO_LINC GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_LINC 121 bp overlap
STAT1 1 dataset
ChIP FaDu_BB608 GSE78212.STAT1.FaDu_BB608 63 bp overlap
STAT3 10 datasets
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 66 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 241 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 105 bp overlap
ChIP MCF-7_jc5842 GSE126004.STAT3.MCF-7_jc5842 260 bp overlap
ChIP MCF-7_jc5844 GSE126004.STAT3.MCF-7_jc5844 269 bp overlap
ChIP MCF-7_jc5848 GSE126004.STAT3.MCF-7_jc5848 167 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 199 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 262 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 236 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 190 bp overlap
SUPT5H 4 datasets
ChIP U2OS_siCtrl GSE115365.SUPT5H.U2OS_siCtrl 84 bp overlap
ChIP U2OS_siMYC GSE115365.SUPT5H.U2OS_siMYC 78 bp overlap
ChIP U2OS_siMYC_High GSE115365.SUPT5H.U2OS_siMYC_High 89 bp overlap
ChIP U2OS_siMYC_ON GSE115365.SUPT5H.U2OS_siMYC_ON 70 bp overlap
TBP 1 dataset
ChIP K-562 GSE55306.TBP.K-562 206 bp overlap
TEAD4 3 datasets
ChIP MKN28 GSE44416.TEAD4.MKN28 202 bp overlap
ChIP T-47D_E2 GSE125594.TEAD4.T-47D_E2 168 bp overlap
ChIP T-47D_Veh GSE125594.TEAD4.T-47D_Veh 140 bp overlap
TFAP2C 2 datasets
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 170 bp overlap
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 228 bp overlap
YY1 6 datasets
ChIP H1 ENCFF524BTL 163 bp overlap
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 95 bp overlap
ChIP K-562 ENCSR000BMH.YY1.K-562 269 bp overlap
ChIP K-562 ENCSR000BKU.YY1.K-562 119 bp overlap
ChIP K562 ENCFF660QRE 93 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 104 bp overlap
YY1AP1 2 datasets
ChIP T-47D_E2 GSE125594.YY1AP1.T-47D_E2 226 bp overlap
ChIP T-47D_Veh GSE125594.YY1AP1.T-47D_Veh 102 bp overlap
ZEB1 1 dataset
ChIP RKO GSE88734.ZEB1.RKO 202 bp overlap
ZNF680 2 datasets
ChIP HEK293 ENCSR307CKC.ZNF680.HEK293 132 bp overlap
ChIP HEK293 GSE76494.ZNF680.HEK293 89 bp overlap
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