chr6 : 69,622,652 69,623,399
747 bp 60 TFs 0 linked genes
This 747 bp open chromatin element has no linked target genes and is bound by 60 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:69,617,652 – 69,628,399
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
60 transcription factors
Source
Cell type
AR 1 dataset
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 92 bp overlap
ARID2 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.ARID2.NGP_ARID1A-mut2 184 bp overlap
ATF4 1 dataset
Motif DE_12h DE_12h-ATF4_MA0833.3 10 bp overlap
BCL11A 1 dataset
Motif DE_12h DE_12h-BCL11A_MA2324.1 7 bp overlap
BRD4 3 datasets
ChIP K-562_DMSO GSE99178.BRD4.K-562_DMSO 100 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 242 bp overlap
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 288 bp overlap
CEBPG 3 datasets
Motif DE_12h DE_12h-CEBPG_MA1636.2 10 bp overlap
ChIP K-562 ENCSR620VIC.CEBPG.K-562 63 bp overlap
ChIP K562 ENCFF783ADE 168 bp overlap
CREB3 2 datasets
ChIP K-562 ENCSR093FKD.CREB3.K-562 141 bp overlap
ChIP K562 ENCFF985QJI 84 bp overlap
CREB3L1 1 dataset
ChIP K562 ENCFF701TVD 240 bp overlap
CTCF 71 datasets
ChIP BE2C ENCFF757SRF 317 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 150 bp overlap
ChIP Caco-2 ENCFF934QYS 217 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 338 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 136 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 289 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 212 bp overlap
ChIP GM12868 ENCSR000DRI.CTCF.GM12868 108 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 98 bp overlap
ChIP GM17942 GSE76922.CTCF.GM17942 332 bp overlap
ChIP GM23338 ENCFF531QOI 196 bp overlap
ChIP GM23338 ENCFF772DML 128 bp overlap
ChIP GM23338 ENCFF832KWE 523 bp overlap
ChIP GM23338 ENCFF832KWE 322 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 277 bp overlap
ChIP H9 ENCFF152GTF 291 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 413 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 202 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 317 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 202 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 192 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 192 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 225 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 284 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 281 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 109 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 119 bp overlap
ChIP HepG2 ENCFF348BUL 197 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 354 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 244 bp overlap
ChIP K-562_13004 GSE131349.CTCF.K-562_13004 132 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 103 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 386 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 505 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.CTCF.K-562_dCas9-LSD1 203 bp overlap
ChIP K562 ENCFF082GOI 185 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 240 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 517 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 220 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 340 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 160 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 163 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 112 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 178 bp overlap
ChIP endodermal cell ENCFF471YCZ 327 bp overlap
ChIP endodermal cell ENCFF471YCZ 315 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 182 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 348 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 173 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 431 bp overlap
ChIP hepatocyte ERP000395.CTCF.hepatocyte 106 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 146 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 136 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 149 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 176 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 306 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 189 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 169 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 177 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 196 bp overlap
ChIP neural crest cell ENCFF182LWK 471 bp overlap
ChIP neural crest cell ENCFF182LWK 300 bp overlap
ChIP neural progenitor cell ENCFF420RBO 184 bp overlap
ChIP neural progenitor cell ENCFF581WPG 562 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 314 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 168 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 437 bp overlap
EP400 1 dataset
ChIP K562 ENCFF850OZQ 112 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOXA1 4 datasets
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 94 bp overlap
ChIP LNCaP_DHT24H GSE58428.FOXA1.LNCaP_DHT24H 98 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 151 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 87 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 251 bp overlap
MGA 2 datasets
ChIP K562 ENCFF140CEX 112 bp overlap
ChIP K562 ENCFF140CEX 314 bp overlap
MYCN 1 dataset
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 96 bp overlap
NFRKB 1 dataset
ChIP K-562 ENCSR657EOF.NFRKB.K-562 120 bp overlap
NR2C2 3 datasets
ChIP K-562 ENCSR750LYM.NR2C2.K-562 54 bp overlap
ChIP K562 ENCFF750AXF 303 bp overlap
ChIP K562 ENCFF750AXF 90 bp overlap
ONECUT3 1 dataset
Motif DE_12h DE_12h-ONECUT3_MA0757.2 12 bp overlap
OSR2 1 dataset
Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap
PAX3 1 dataset
Motif DE_12h DE_12h-PAX3_MA0780.1 10 bp overlap
PHOX2A 1 dataset
Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap
PKNOX1 2 datasets
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 505 bp overlap
POU2F1 1 dataset
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 157 bp overlap
Pax7 1 dataset
Motif DE_12h DE_12h-Pax7_MA0680.3 10 bp overlap
RAD21 17 datasets
ChIP GM12878 ENCFF101UQZ 191 bp overlap
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 105 bp overlap
ChIP H1 ENCFF698EWO 78 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 189 bp overlap
ChIP Hep-G2 ENCSR054FKH.RAD21.Hep-G2 111 bp overlap
ChIP HepG2 ENCFF360ZSW 217 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 91 bp overlap
ChIP K-562_RF2-insertion GSE140868.RAD21.K-562_RF2-insertion 171 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 244 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 198 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 158 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 220 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 222 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 153 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 192 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 151 bp overlap
Rhox11 1 dataset
Motif DE_12h DE_12h-Rhox11_MA0629.2 9 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 110 bp overlap
SMARCA4 3 datasets
ChIP NGP GSE134626.SMARCA4.NGP 181 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 235 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 747 bp overlap
SMC3 1 dataset
ChIP hESC_D0 GSE116862.SMC3.hESC_D0 165 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 117 bp overlap
SOX21 1 dataset
Motif DE_12h DE_12h-SOX21_MA0866.1 15 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 259 bp overlap
SREBF2 1 dataset
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 61 bp overlap
TEAD3 1 dataset
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
TFAP2C 1 dataset
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
TRIM24 1 dataset
ChIP K562 ENCFF616RIL 86 bp overlap
ZBTB17 1 dataset
Motif DE_12h DE_12h-ZBTB17_MA2102.1 8 bp overlap
ZBTB40 1 dataset
ChIP K562 ENCFF337GJB 203 bp overlap
ZBTB6 1 dataset
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
ZBTB7C 1 dataset
Motif DE_12h DE_12h-ZBTB7C_MA0695.2 8 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZNF189 1 dataset
Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap
ZNF395 1 dataset
ChIP K562 ENCFF464EIT 229 bp overlap
ZNF528 1 dataset
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
ZNF584 1 dataset
ChIP K562 ENCFF771INO 204 bp overlap
ZSCAN16 1 dataset
Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap