chr6 : 52,570,669 52,571,485
816 bp 60 TFs 2 linked genes
This 816 bp open chromatin element is linked to TRAM2 and TRAM2-AS1 and is bound by 60 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
TRAM2 5.6 kb Proximal Proximity
TRAM2-AS1 5.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:52,565,669 – 52,576,485
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
60 transcription factors
Source
Cell type
BNC2 1 dataset
ChIP SK-N-SH ENCFF174EMC 425 bp overlap
BRD4 3 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 182 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 103 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 329 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 138 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 58 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 361 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 407 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 327 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 191 bp overlap
CTCF 1 dataset
ChIP RH4 GSE83726.CTCF.RH4 148 bp overlap
EBF1 1 dataset
ChIP NALM-6 GSE126300.EBF1.NALM-6 225 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 377 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 308 bp overlap
ETS1 1 dataset
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 193 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 158 bp overlap
FOXA2 2 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 212 bp overlap
ChIP DE DE-FOXA2-1 488 bp overlap
GATA2 6 datasets
ChIP SH-SY5Y ENCFF485YIB 142 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 560 bp overlap
ChIP SK-N-SH ENCFF764OZD 417 bp overlap
ChIP SK-N-SH ENCFF764OZD 275 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 448 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 223 bp overlap
GATA3 6 datasets
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 271 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 332 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 333 bp overlap
ChIP SH-SY5Y ENCFF475HYF 481 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 504 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 396 bp overlap
GATA4 7 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 196 bp overlap
ChIP DE DE-GATA4-1 628 bp overlap
ChIP DE DE-GATA4-2 607 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 430 bp overlap
ChIP foregut GSE117136.GATA4.foregut 567 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 524 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 373 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 582 bp overlap
ChIP DE DE-GATA6-2 654 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 321 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 333 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 318 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 490 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 355 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 460 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 352 bp overlap
ChIP foregut GSE117136.GATA6.foregut 562 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 453 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 337 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 342 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 375 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 130 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 276 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 102 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 172 bp overlap
HNRNPK 2 datasets
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 272 bp overlap
ChIP Hep-G2 ENCSR519QAA.HNRNPK.Hep-G2 200 bp overlap
HOMEZ 1 dataset
ChIP HepG2 ENCFF800ZQH 255 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 70 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 398 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 485 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 328 bp overlap
MTA2 2 datasets
ChIP RH4 GSE155861.MTA2.RH4 239 bp overlap
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 79 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCFF746HVJ 352 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 322 bp overlap
MYC 1 dataset
ChIP NCI-H128 GSE41105.MYC.NCI-H128 175 bp overlap
MYCN 3 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 172 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 539 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 257 bp overlap
MYF5 1 dataset
ChIP Rh18 GSE84628.MYF5.Rh18 60 bp overlap
MYOD1 4 datasets
ChIP RD GSE137168.MYOD1.RD 233 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 303 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 158 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 96 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 120 bp overlap
PDX1 1 dataset
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 150 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 230 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 626 bp overlap
POLR2A 5 datasets
ChIP esophagus muscularis mucosa ENCFF791ZXN 197 bp overlap
ChIP gastroesophageal sphincter ENCFF070PCA 61 bp overlap
ChIP sigmoid colon ENCFF725QFT 71 bp overlap
ChIP transverse colon ENCFF610RWV 97 bp overlap
ChIP transverse colon ENCFF840PXT 135 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 215 bp overlap
RAD21 2 datasets
ChIP RH4 GSE83726.RAD21.RH4 154 bp overlap
ChIP SK-N-SH ENCFF747MAS 251 bp overlap
RBBP4 1 dataset
ChIP RH5 GSE155861.RBBP4.RH5 318 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 365 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 479 bp overlap
REST 4 datasets
ChIP GM23338 ENCSR871KYB.REST.GM23338 102 bp overlap
ChIP HEK293 ENCFF073DOT 271 bp overlap
ChIP HEK293 ENCSR896UBV.REST.HEK293 221 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 145 bp overlap
RFX1 2 datasets
ChIP HepG2 ENCFF144SCF 301 bp overlap
ChIP MCF-7 ENCFF782EZS 373 bp overlap
RUNX1 1 dataset
ChIP NALM-6 GSE126300.RUNX1.NALM-6 150 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 148 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 93 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 286 bp overlap
SMARCA4 3 datasets
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 320 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 285 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 312 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 248 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 306 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 203 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 306 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 296 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 296 bp overlap
YY1 1 dataset
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 147 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 148 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 175 bp overlap
ZBTB6 1 dataset
ChIP HEK293 ENCFF881ECZ 66 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 191 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 77 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 312 bp overlap