chr6 : 37,319,150 37,319,973
823 bp 54 TFs 5 linked genes
This 823 bp open chromatin element is linked to 5 target genes and is bound by 54 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
RNF8 34.4 kb Distal Multiome
TBC1D22B 61.8 kb Distal Multiome
CMTR1 113.6 kb Distal Multiome
PIM1 149.4 kb Distal Multiome
CCDC167 180.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:37,314,150 – 37,324,973
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
54 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 650 bp overlap
BNC2 2 datasets
ChIP SK-N-SH ENCFF174EMC 406 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 178 bp overlap
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 173 bp overlap
BRD4 2 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 188 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 319 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 319 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 146 bp overlap
CREB5 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 199 bp overlap
CREBBP 1 dataset
ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 131 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 194 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 212 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 73 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 589 bp overlap
EP300 3 datasets
ChIP PC-3 GSE147455.EP300.PC-3 138 bp overlap
ChIP SK-N-SH ENCFF829RWA 377 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 357 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 290 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 729 bp overlap
ChIP DE DE-FOXA2-2 716 bp overlap
GATA2 2 datasets
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 269 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 204 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 755 bp overlap
ChIP DE DE-GATA4-2 804 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 823 bp overlap
ChIP DE DE-GATA6-2 823 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 802 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 756 bp overlap
GRHL2 1 dataset
ChIP OVCA429 GSE71018.GRHL2.OVCA429 74 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 372 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 448 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 296 bp overlap
ChIP SK-N-SH ENCFF285GEQ 426 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 271 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 115 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 379 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCFF746HVJ 386 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 280 bp overlap
MYC 1 dataset
ChIP BJ_INDUCED GSE36570.MYC.BJ_INDUCED 209 bp overlap
MYCN 6 datasets
ChIP BE2C GSE80151.MYCN.BE2C 218 bp overlap
ChIP CHP-134 GSE129588.MYCN.CHP-134 216 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 386 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 362 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 218 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 240 bp overlap
NEUROD1 6 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 664 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 612 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 483 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 241 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 189 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 154 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 457 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 261 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 776 bp overlap
PPARA 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR602QEJ.PPARA.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 243 bp overlap
RAD21 2 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 587 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 161 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 365 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 375 bp overlap
REST 3 datasets
ChIP SK-N-SH ENCFF635KBN 217 bp overlap
ChIP SK-N-SH ENCFF861MKH 244 bp overlap
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 289 bp overlap
SMAD2 2 datasets
ChIP endoderm GSE29422.SMAD2.endoderm 366 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 154 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 823 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 726 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 736 bp overlap
SMAD3 3 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 110 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 123 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 379 bp overlap
SMAD4 2 datasets
ChIP endoderm GSE29422.SMAD4.endoderm 306 bp overlap
ChIP endoderm GSE29422.SMAD4.endoderm 139 bp overlap
SMARCA4 1 dataset
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 178 bp overlap
SMC1 1 dataset
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.SMC1.HAP1_WaplKO-33_SCC4KO 228 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 579 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 812 bp overlap
STAT3 4 datasets
ChIP A139 GSE85579.STAT3.A139 132 bp overlap
ChIP HCC1187 GSE152203.STAT3.HCC1187 195 bp overlap
ChIP HCC70 GSE152203.STAT3.HCC70 232 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 183 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 368 bp overlap
TCF4 1 dataset
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 231 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 355 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 355 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 415 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 381 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 430 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 363 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 363 bp overlap
YY1 1 dataset
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 244 bp overlap
ZFP3 2 datasets
ChIP SK-N-SH ENCFF981MBE 316 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 238 bp overlap
ZNF341 3 datasets
ChIP HEK293 ENCFF944VMC 323 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 445 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 189 bp overlap