chr1 : 108,861,842 – 108,862,840
998 bp 54 TFs 9 linked genes
This 998 bp open chromatin element is linked to 9 target genes and is bound by 54 transcription factors.
Linked Genes
9 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
GPSM2 14.6 kb Distal Multiome
AKNAD1 101.1 kb Distal Multiome
CLCC1 101.1 kb Distal Multiome
STXBP3 115.8 kb Distal Multiome
PRPF38B 170.1 kb Distal Multiome
WDR47 179.7 kb Distal Multiome
HENMT1 201.4 kb Distal Multiome
TAF13 213.6 kb Distal Multiome
TMEM167B 228.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:108,856,842 – 108,867,840
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
54 transcription factors
Source
Cell type
Arid3a 1 dataset
Motif DE_48h DE_48h-Arid3a_MA0151.1 6 bp overlap
CEBPA 10 datasets
ChIP Kasumi-1_CEBPA-ER GSE102697.CEBPA.Kasumi-1_CEBPA-ER 95 bp overlap
ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 113 bp overlap
ChIP T-47D_siCtrl GSE132649.CEBPA.T-47D_siCtrl 65 bp overlap
ChIP THP-1_1-25D_24h GSE124032.CEBPA.THP-1_1-25D_24h 111 bp overlap
ChIP THP-1_1-25D_2h GSE124032.CEBPA.THP-1_1-25D_2h 101 bp overlap
ChIP THP-1_1-25D_8h GSE124032.CEBPA.THP-1_1-25D_8h 174 bp overlap
ChIP THP-1_EtOH_24h GSE124032.CEBPA.THP-1_EtOH_24h 153 bp overlap
ChIP THP-1_EtOH_2h GSE124032.CEBPA.THP-1_EtOH_2h 280 bp overlap
ChIP THP-1_EtOH_8h GSE124032.CEBPA.THP-1_EtOH_8h 148 bp overlap
ChIP U-937 ERP008568.CEBPA.U-937 79 bp overlap
CEBPB 8 datasets
ChIP H1 ENCFF871PTR 62 bp overlap
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 247 bp overlap
ChIP K562 ENCFF584CTB 168 bp overlap
ChIP K562 ENCFF584CTB 370 bp overlap
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 62 bp overlap
ChIP THP-1_NS1-Pam3csk-4h GSE103477.CEBPB.THP-1_NS1-Pam3csk-4h 143 bp overlap
ChIP THP-1_eGFP-Pam3csk-4h GSE103477.CEBPB.THP-1_eGFP-Pam3csk-4h 105 bp overlap
ChIP monocyte_INFg GSE98367.CEBPB.monocyte_INFg 75 bp overlap
CEBPG 4 datasets
ChIP K-562 ENCSR490LWA.CEBPG.K-562 120 bp overlap
ChIP K562 ENCFF783ADE 231 bp overlap
ChIP MCF-7 ENCFF155HZI 204 bp overlap
ChIP MCF-7 ENCSR094ZCF.CEBPG.MCF-7 96 bp overlap
Cebpa 7 datasets
ChIP BLaER1 ENCFF140EYR 118 bp overlap
ChIP BLaER1 ENCFF250ODG 114 bp overlap
ChIP BLaER1 ENCFF250ODG 365 bp overlap
ChIP BLaER1 ENCFF262VBH 309 bp overlap
ChIP BLaER1 ENCFF460KDD 268 bp overlap
ChIP BLaER1 ENCFF798NMV 149 bp overlap
ChIP BLaER1 ENCFF844FIP 88 bp overlap
Crx 1 dataset
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 535 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 239 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 211 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 210 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 898 bp overlap
ChIP DE DE-FOXA2-2 896 bp overlap
FOXB1 1 dataset
Motif DE_48h DE_48h-FOXB1_MA0845.1 11 bp overlap
FOXN3 1 dataset
Motif DE_48h DE_48h-FOXN3_MA1489.1 8 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 825 bp overlap
ChIP DE DE-GATA4-2 914 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 845 bp overlap
ChIP DE DE-GATA6-2 976 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 493 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 454 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 534 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 482 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 422 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 417 bp overlap
GSC 1 dataset
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
HOXA3 1 dataset
Motif DE_48h DE_48h-HOXA3_MA2119.1 7 bp overlap
HOXA4 1 dataset
Motif DE_48h DE_48h-HOXA4_MA1496.2 7 bp overlap
HOXB4 1 dataset
Motif DE_48h DE_48h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_48h DE_48h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif DE_48h DE_48h-HOXD4_MA1507.2 6 bp overlap
KMT2B 1 dataset
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 206 bp overlap
MAX 3 datasets
ChIP NB4 ENCFF966MWB 69 bp overlap
ChIP P493-6 GSE36354.MAX.P493-6 107 bp overlap
ChIP P493-6_24HR GSE125863.MAX.P493-6_24HR 71 bp overlap
MEIS1 1 dataset
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
NANOG 1 dataset
ChIP hESC GSE18292.NANOG.hESC 94 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 379 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 401 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 340 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 208 bp overlap
NKX6-3 1 dataset
Motif DE_48h DE_48h-NKX6-3_MA1530.2 8 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 177 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 451 bp overlap
OTX1 1 dataset
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
Motif DE_48h DE_48h-OTX2_MA0712.3 7 bp overlap
PITX1 1 dataset
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_48h DE_48h-PITX2_MA1547.2 8 bp overlap
PITX3 1 dataset
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 157 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 356 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 168 bp overlap
PRDM9 1 dataset
Motif DE_48h DE_48h-PRDM9_MA1723.2 20 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 253 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 447 bp overlap
RHOXF1 1 dataset
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 715 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 902 bp overlap
SOX21 1 dataset
Motif DE_48h DE_48h-SOX21_MA0866.1 15 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 531 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 618 bp overlap
Sox1 1 dataset
Motif DE_48h DE_48h-Sox1_MA0870.1 15 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 277 bp overlap
TCF7L2 1 dataset
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 311 bp overlap
ZKSCAN1 2 datasets
Motif DE_48h DE_48h-ZKSCAN1_MA1585.2 9 bp overlap
ChIP K-562 ENCSR882ERE.ZKSCAN1.K-562 136 bp overlap
ZNF343 1 dataset
Motif DE_48h DE_48h-ZNF343_MA1711.2 16 bp overlap
ZNF362 2 datasets
ChIP HEK293 ENCFF436CGE 217 bp overlap
ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 191 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 99 bp overlap
ZNF768 1 dataset
Motif DE_48h DE_48h-ZNF768_MA1731.2 9 bp overlap
ZNF823 1 dataset
ChIP HEK293T GSE78099.ZNF823.HEK293T 461 bp overlap
Zic2 1 dataset
Motif DE_48h DE_48h-Zic2_MA1629.2 9 bp overlap
Huangfu Lab · Publications · Resources · Contact