chr5 : 107,696,134 – 107,696,781
647 bp 82 TFs 1 linked gene
This 647 bp open chromatin element is linked to ENSG00000249959 and is bound by 82 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000249959 8.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:107,691,134 – 107,701,781
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
82 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 173 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 420 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 182 bp overlap
BCL11A 1 dataset
Motif DE_12h DE_12h-BCL11A_MA2324.1 7 bp overlap
BMI1 1 dataset
ChIP MCF-7 ENCSR966YYJ.BMI1.MCF-7 253 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 329 bp overlap
CTCF 21 datasets
ChIP HAP1 GSE152721.CTCF.HAP1 252 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 159 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 197 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 153 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 200 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 338 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 207 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 206 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 207 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 221 bp overlap
ChIP HEC-1-B_ac1-CBS-deletion GSE140868.CTCF.HEC-1-B_ac1-CBS-deletion 58 bp overlap
ChIP NPC GSE115407.CTCF.NPC 265 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 148 bp overlap
ChIP anterior-temporal-cortex_adult GSE116825.CTCF.anterior-temporal-cortex_adult 119 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 178 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 191 bp overlap
ChIP hiPSC_IIIB12 GSE106870.CTCF.hiPSC_IIIB12 74 bp overlap
ChIP neural progenitor cell ENCFF420RBO 249 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 198 bp overlap
ChIP spleen ENCSR225YGX.CTCF.spleen 282 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 235 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 148 bp overlap
EHF 2 datasets
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
Motif ES_0h ES_0h-EHF_MA0598.4 9 bp overlap
ELF3 2 datasets
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
Motif ES_0h ES_0h-ELF3_MA0640.3 9 bp overlap
ESR1 2 datasets
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 108 bp overlap
ChIP T-47D GSE148277.ESR1.T-47D 238 bp overlap
Elf5 2 datasets
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
Motif ES_0h ES_0h-Elf5_MA0136.4 8 bp overlap
Erg 2 datasets
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
Motif ES_0h ES_0h-Erg_MA0474.4 10 bp overlap
Foxl2 2 datasets
Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap
Motif ES_0h ES_0h-Foxl2_MA1607.2 10 bp overlap
GABPA 2 datasets
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
Motif ES_0h ES_0h-GABPA_MA0062.4 10 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000BNR.HDAC2.WA01 197 bp overlap
IKZF2 2 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
Msgn1 2 datasets
Motif DE_12h DE_12h-Msgn1_MA1524.3 10 bp overlap
Motif ES_0h ES_0h-Msgn1_MA1524.3 10 bp overlap
NANOG 3 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 257 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 232 bp overlap
ChIP hESC GSE18292.NANOG.hESC 134 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 176 bp overlap
NOTCH3 1 dataset
ChIP TALL-1_GSI GSE104261.NOTCH3.TALL-1_GSI 94 bp overlap
NR4A1 2 datasets
Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap
Motif ES_0h ES_0h-NR4A1_MA1112.3 8 bp overlap
NR4A2 2 datasets
Motif DE_12h DE_12h-NR4A2_MA0160.3 8 bp overlap
Motif ES_0h ES_0h-NR4A2_MA0160.3 8 bp overlap
Nfat5 1 dataset
Motif ES_0h ES_0h-Nfat5_MA0606.3 8 bp overlap
Nfatc2 2 datasets
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
Motif ES_0h ES_0h-Nfatc2_MA0152.3 8 bp overlap
Nr2F6 2 datasets
Motif DE_12h DE_12h-Nr2F6_MA0728.1 15 bp overlap
Motif ES_0h ES_0h-Nr2F6_MA0728.1 15 bp overlap
OSR1 1 dataset
Motif DE_12h DE_12h-OSR1_MA1542.2 8 bp overlap
OSR2 1 dataset
Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap
POU1F1 2 datasets
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap
POU2F1 2 datasets
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
POU2F1::SOX2 2 datasets
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F2 2 datasets
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
POU2F3 2 datasets
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
POU3F1 2 datasets
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F2 2 datasets
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F3 2 datasets
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU3F4 2 datasets
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU4F2 2 datasets
Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap
Motif ES_0h ES_0h-POU4F2_MA0683.2 15 bp overlap
POU5F1 6 datasets
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 480 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 347 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 138 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 148 bp overlap
POU5F1B 2 datasets
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap
PRDM9 1 dataset
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
Pou5f1::Sox2 4 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
RAD21 12 datasets
ChIP H1 ENCFF698EWO 209 bp overlap
ChIP H1 ENCFF967OJF 194 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 459 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 381 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 379 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 302 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 189 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 182 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 160 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 173 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 151 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 179 bp overlap
RARA 2 datasets
Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap
Motif ES_0h ES_0h-RARA_MA0729.1 18 bp overlap
RFX1 2 datasets
ChIP MCF-7 ENCFF973QAD 405 bp overlap
ChIP MCF-7 ENCSR788XNX.RFX1.MCF-7 314 bp overlap
Rarb 2 datasets
Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap
Motif ES_0h ES_0h-Rarb_MA0857.1 16 bp overlap
Rarg 2 datasets
Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap
Motif ES_0h ES_0h-Rarg_MA0859.2 15 bp overlap
SMAD2-3 1 dataset
ChIP HGrC1_EV GSE138496.SMAD2-3.HGrC1_EV 65 bp overlap
SMARCA4 5 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 296 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 284 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 357 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 168 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 323 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 220 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 170 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 220 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 306 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 185 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 338 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 320 bp overlap
SP4 2 datasets
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SPIB 2 datasets
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
Motif ES_0h ES_0h-SPIB_MA0081.3 13 bp overlap
SPIC 1 dataset
Motif ES_0h ES_0h-SPIC_MA0687.2 13 bp overlap
STAT1 2 datasets
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
Motif ES_0h ES_0h-STAT1_MA0137.4 9 bp overlap
STAT3 2 datasets
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
Motif ES_0h ES_0h-STAT3_MA0144.3 9 bp overlap
Sox6 2 datasets
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
Spi1 2 datasets
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Motif ES_0h ES_0h-Spi1_MA0080.7 13 bp overlap
Spz1 1 dataset
Motif DE_12h DE_12h-Spz1_MA0111.1 11 bp overlap
Stat4 4 datasets
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
Motif ES_0h ES_0h-Stat4_MA0518.2 10 bp overlap
Motif ES_0h ES_0h-Stat4_MA0518.2 10 bp overlap
Stat5a 2 datasets
Motif DE_12h DE_12h-Stat5a_MA1624.2 9 bp overlap
Motif ES_0h ES_0h-Stat5a_MA1624.2 9 bp overlap
Stat5a::Stat5b 2 datasets
Motif DE_12h DE_12h-Stat5aStat5b_MA0519.2 9 bp overlap
Motif ES_0h ES_0h-Stat5aStat5b_MA0519.2 9 bp overlap
Stat5b 2 datasets
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
Motif ES_0h ES_0h-Stat5b_MA1625.2 9 bp overlap
TBP 2 datasets
ChIP hESC_2h GSE122298.TBP.hESC_2h 120 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 116 bp overlap
TCF7L2 1 dataset
ChIP hepatocellular-carcinoma-cell_420 GSE138781.TCF7L2.hepatocellular-carcinoma-cell_420 132 bp overlap
TERF2 1 dataset
ChIP LCL GSE55053.TERF2.LCL 113 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 163 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 193 bp overlap
ZNF140 2 datasets
Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap
Motif ES_0h ES_0h-ZNF140_MA1589.2 19 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 168 bp overlap
ZNF213 4 datasets
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
Motif ES_0h ES_0h-ZNF213_MA2121.1 12 bp overlap
Motif ES_0h ES_0h-ZNF213_MA2121.1 12 bp overlap
ZNF263 2 datasets
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
Motif ES_0h ES_0h-ZNF263_MA0528.3 7 bp overlap
ZNF418 2 datasets
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
Motif ES_0h ES_0h-ZNF418_MA1980.1 15 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 149 bp overlap
ZNF530 1 dataset
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
ZNF549 2 datasets
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
Motif ES_0h ES_0h-ZNF549_MA1728.2 8 bp overlap
ZNF675 1 dataset
Motif ES_0h ES_0h-ZNF675_MA1714.2 19 bp overlap
ZNF677 2 datasets
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
Motif ES_0h ES_0h-ZNF677_MA2101.1 12 bp overlap
Zfp809 2 datasets
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap
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