chr5 : 98,880,190 – 98,880,396
206 bp 58 TFs 1 linked gene
This 206 bp open chromatin element is linked to CHD1 and is bound by 58 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CHD1 8.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:98,875,190 – 98,885,396
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
58 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP 12Z GSE129781.ARID1A.12Z 143 bp overlap
ATF3 1 dataset
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 135 bp overlap
BRD2 1 dataset
ChIP MDA-MB-231_NTsiRNA_JQ1 GSE116879.BRD2.MDA-MB-231_NTsiRNA_JQ1 182 bp overlap
BRD4 6 datasets
ChIP MDA-MB-231_JQ1 GSE116879.BRD4.MDA-MB-231_JQ1 206 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801 206 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801_rDNA 206 bp overlap
ChIP MDA-MB-231_JQ1_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_rDNA 206 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 206 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 206 bp overlap
BRD9 3 datasets
ChIP MDA-MB-231_JQ1 GSE116879.BRD9.MDA-MB-231_JQ1 172 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD9.MDA-MB-231_JQ1_MGSK2801 206 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD9.MDA-MB-231_MGSK2801 206 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 118 bp overlap
CEBPB 7 datasets
ChIP HCT-116 ENCSR000BSD.CEBPB.HCT-116 131 bp overlap
ChIP HCT116 ENCFF097OLY 206 bp overlap
ChIP K-562 ENCSR000EHE.CEBPB.K-562 153 bp overlap
ChIP K-562 ENCSR000BRQ.CEBPB.K-562 155 bp overlap
ChIP K562 ENCFF194QGF 206 bp overlap
ChIP K562 ENCFF584CTB 206 bp overlap
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 137 bp overlap
CEBPG 1 dataset
ChIP K-562 ENCSR620VIC.CEBPG.K-562 206 bp overlap
CHD4 1 dataset
ChIP HaCaT GSE139685.CHD4.HaCaT 206 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF093OYK 206 bp overlap
DAXX 1 dataset
ChIP PC-3 GSE68647.DAXX.PC-3 174 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 206 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 132 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 206 bp overlap
EPAS1 1 dataset
ChIP PC-3_hypoxia GSE106305.EPAS1.PC-3_hypoxia 184 bp overlap
ESR1 1 dataset
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 159 bp overlap
FOS 2 datasets
ChIP CD4 GSE116695.FOS.CD4 206 bp overlap
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 206 bp overlap
FOSL1 3 datasets
ChIP HCT-116 ENCSR000BTE.FOSL1.HCT-116 53 bp overlap
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 197 bp overlap
ChIP K562 ENCFF455MKD 206 bp overlap
FOXA1 8 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 206 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 206 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 206 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 206 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 206 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 206 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 206 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 186 bp overlap
FOXA2 5 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 123 bp overlap
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 206 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 206 bp overlap
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 148 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 206 bp overlap
GATA1 1 dataset
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 165 bp overlap
GATA2 2 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 178 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 181 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 206 bp overlap
ChIP DE DE-GATA4-2 206 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 86 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 206 bp overlap
ChIP DE DE-GATA6-2 206 bp overlap
ChIP OACP4-C GSE132680.GATA6.OACP4-C 206 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 166 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 205 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 182 bp overlap
GLYR1 1 dataset
ChIP HeLa GSE20303.GLYR1.HeLa 206 bp overlap
HIF1A 2 datasets
ChIP PC-3_hypoxia_siCtrl GSE106305.HIF1A.PC-3_hypoxia_siCtrl 134 bp overlap
ChIP PC-3_hypoxia_siSMAD3 GSE106305.HIF1A.PC-3_hypoxia_siSMAD3 158 bp overlap
HLF 1 dataset
ChIP HepG2 ENCFF854JLR 108 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 206 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 206 bp overlap
HOXC6 1 dataset
ChIP 22Rv1 GSE129951.HOXC6.22Rv1 105 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 206 bp overlap
JUN 1 dataset
ChIP Calu-3 GSE85401.JUN.Calu-3 139 bp overlap
JUNB 3 datasets
ChIP CD4 GSE116695.JUNB.CD4 142 bp overlap
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 206 bp overlap
ChIP Karpas-299 GSE151413.JUNB.Karpas-299 206 bp overlap
JUND 2 datasets
ChIP Calu-3 GSE85401.JUND.Calu-3 90 bp overlap
ChIP HT29_DSMO GSE77039.JUND.HT29_DSMO 98 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 206 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 206 bp overlap
KMT2A 1 dataset
ChIP OCI-AML-3_DMSO GSE129636.KMT2A.OCI-AML-3_DMSO 206 bp overlap
MAML1 1 dataset
ChIP SCC_4h GSE156486.MAML1.SCC_4h 168 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 206 bp overlap
NR1H2 1 dataset
ChIP HT29_GW3965_2H GSE77039.NR1H2.HT29_GW3965_2H 171 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 120 bp overlap
NR3C1 2 datasets
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 172 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 156 bp overlap
ONECUT2 3 datasets
ChIP AGS_Overexpression GSE113045.ONECUT2.AGS_Overexpression 74 bp overlap
ChIP PC-3_hypoxia GSE106305.ONECUT2.PC-3_hypoxia 51 bp overlap
ChIP PC-3_normoxia GSE106305.ONECUT2.PC-3_normoxia 72 bp overlap
PPARG 1 dataset
ChIP HT29_ROSIG_2H GSE77039.PPARG.HT29_ROSIG_2H 170 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 206 bp overlap
RBPJ 1 dataset
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 139 bp overlap
RELA 2 datasets
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 194 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 167 bp overlap
RUNX1 1 dataset
ChIP NB4 GSE81992.RUNX1.NB4 172 bp overlap
SFPQ 1 dataset
ChIP LTAD_siCTBP1-AS-EtOH GSE94577.SFPQ.LTAD_siCTBP1-AS-EtOH 90 bp overlap
SMAD3 5 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 82 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 179 bp overlap
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 206 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 206 bp overlap
ChIP PC-3_hypoxia GSE106305.SMAD3.PC-3_hypoxia 167 bp overlap
SMAD3-HIF1A 1 dataset
ChIP PC-3_hypoxia GSE106305.SMAD3-HIF1A.PC-3_hypoxia 179 bp overlap
SMARCA4 3 datasets
ChIP A-549_AG15720 GSE132290.SMARCA4.A-549_AG15720 146 bp overlap
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 104 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 150 bp overlap
SOX2 1 dataset
ChIP KNS-62 GSE137459.SOX2.KNS-62 163 bp overlap
STAT3 3 datasets
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 206 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 119 bp overlap
ChIP NCI-H358 GSE79707.STAT3.NCI-H358 206 bp overlap
SUPT5H 3 datasets
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 53 bp overlap
ChIP MOLT-4_NVP2 GSE89384.SUPT5H.MOLT-4_NVP2 94 bp overlap
ChIP MOLT-4_SNS GSE89384.SUPT5H.MOLT-4_SNS 104 bp overlap
TCF7L2 1 dataset
ChIP LNCaP GSE51621.TCF7L2.LNCaP 131 bp overlap
TEAD1 1 dataset
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 157 bp overlap
ZEB1 1 dataset
ChIP PDAC GSE64557.ZEB1.PDAC 131 bp overlap
ZMYND8 1 dataset
ChIP MDA-MB-231 GSE108833.ZMYND8.MDA-MB-231 65 bp overlap
ZZZ3 1 dataset
ChIP K-562 ENCSR780BBJ.ZZZ3.K-562 206 bp overlap
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