chr5 : 97,134,604 97,135,023
419 bp 69 TFs 1 linked gene
This 419 bp open chromatin element is linked to LIX1 and is bound by 69 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LIX1 7.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:97,129,604 – 97,140,023
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
69 transcription factors
Source
Cell type
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 419 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 419 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 314 bp overlap
BCL11A 3 datasets
ChIP H1 ENCFF833IPY 145 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 158 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 125 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 157 bp overlap
CHD7 2 datasets
ChIP WA01 ENCSR000AVA.CHD7.WA01 155 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 369 bp overlap
CREB1 2 datasets
ChIP H1 ENCFF955PMP 274 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 209 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 344 bp overlap
CTCF 16 datasets
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
Motif ES_0h ES_0h-CTCF_MA1930.2 33 bp overlap
ChIP H9 ENCFF152GTF 419 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 181 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 204 bp overlap
ChIP brain ENCFF685VRG 419 bp overlap
ChIP brain ENCFF685VRG 374 bp overlap
ChIP endodermal cell ENCFF471YCZ 180 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 165 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 149 bp overlap
ChIP neural progenitor cell ENCFF420RBO 156 bp overlap
ChIP neural progenitor cell ENCFF581WPG 419 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 323 bp overlap
ChIP stomach ENCSR361KVZ.CTCF.stomach 133 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 419 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 265 bp overlap
CTCF_s 1 dataset
ChIP HeLa-S3_biotin GSE108869.CTCF_s.HeLa-S3_biotin 139 bp overlap
DPF2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-T910M 208 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 204 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 162 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 246 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 234 bp overlap
ChIP hESC GSE17917.EP300.hESC 277 bp overlap
ESR1 2 datasets
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 94 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 194 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 130 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 205 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 215 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 252 bp overlap
KLF4 1 dataset
ChIP WA09 GSE105028.KLF4.WA09 197 bp overlap
Lef1 2 datasets
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
Motif ES_0h ES_0h-Lef1_MA0768.3 8 bp overlap
MAFK 2 datasets
Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap
Motif ES_0h ES_0h-MAFK_MA0496.4 10 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 161 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 331 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 416 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 232 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 259 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 284 bp overlap
ChIP hESC GSE18292.NANOG.hESC 101 bp overlap
Nfatc2 1 dataset
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 92 bp overlap
POU5F1 4 datasets
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 404 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 373 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 148 bp overlap
RAD21 4 datasets
ChIP H1 ENCFF698EWO 226 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 197 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 240 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 304 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 403 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 243 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
REL 1 dataset
Motif DE_12h DE_12h-REL_MA0101.1 10 bp overlap
RELA 3 datasets
Motif DE_12h DE_12h-RELA_MA0107.1 10 bp overlap
ChIP LNCaP_DHT_TNFA GSE83860.RELA.LNCaP_DHT_TNFA 170 bp overlap
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 195 bp overlap
RFX5 1 dataset
Motif DE_12h DE_12h-RFX5_MA0510.3 14 bp overlap
Runx1 2 datasets
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
Motif ES_0h ES_0h-Runx1_MA0002.3 9 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 272 bp overlap
SMAD3 3 datasets
ChIP BG03 GSE21614.SMAD3.BG03 217 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 159 bp overlap
Motif DE_12h DE_12h-SMAD3_MA0795.1 10 bp overlap
SMAD5 1 dataset
Motif DE_12h DE_12h-SMAD5_MA1557.1 10 bp overlap
SMARCA4 5 datasets
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 290 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 192 bp overlap
ChIP SYO-1 GSE108025.SMARCA4.SYO-1 419 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 355 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 216 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 238 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 263 bp overlap
SMARCC1 3 datasets
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 366 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 353 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 289 bp overlap
SOX10 2 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 419 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 284 bp overlap
ChIP hiPSC_INHI GSE67282.SOX2.hiPSC_INHI 193 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 261 bp overlap
SOX4 2 datasets
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 300 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 189 bp overlap
SS18 2 datasets
ChIP SYO-1 GSE108025.SS18.SYO-1 419 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 326 bp overlap
STAT1 1 dataset
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
STAT3 1 dataset
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
Sox11 2 datasets
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Motif ES_0h ES_0h-Sox11_MA0869.3 8 bp overlap
Sox6 2 datasets
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 186 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 342 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 245 bp overlap
TRIM28 2 datasets
ChIP WA01 GSE78099.TRIM28.WA01 121 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 381 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 317 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 200 bp overlap
ZIM3 1 dataset
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 269 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 237 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 265 bp overlap
ZNF708 2 datasets
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
Motif ES_0h ES_0h-ZNF708_MA1730.2 9 bp overlap
ZSCAN29 1 dataset
Motif DE_12h DE_12h-ZSCAN29_MA1602.2 11 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Zic1::Zic2 2 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif ES_0h ES_0h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 2 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap
Zic3 2 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap