chr1 : 93,766,384 93,767,069
685 bp 72 TFs 0 linked genes
This 685 bp open chromatin element has no linked target genes and is bound by 72 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:93,761,384 – 93,772,069
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
72 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 ERP001226.AR.MCF-7 165 bp overlap
ARID1A 1 dataset
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 367 bp overlap
BRD4 4 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 283 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 133 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 255 bp overlap
ChIP SUM185_DMSO GSE63581.BRD4.SUM185_DMSO 167 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 218 bp overlap
CHD4 1 dataset
ChIP RH5 GSE155861.CHD4.RH5 297 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 304 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 443 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 466 bp overlap
CTCF 3 datasets
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 303 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 223 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 238 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF274GAT 230 bp overlap
ChIP BLaER1 ENCFF460KDD 76 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF451CNG 385 bp overlap
ChIP SK-N-SH ENCSR000BUA.EP300.SK-N-SH 187 bp overlap
ESR1 5 datasets
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 348 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 203 bp overlap
ChIP MCF-7 GSE41561.ESR1.MCF-7 165 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 215 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 215 bp overlap
EVI1 1 dataset
ChIP SKH1_10d GSE87283.EVI1.SKH1_10d 166 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 384 bp overlap
FOXA1 2 datasets
ChIP MCF-7 ERP001226.FOXA1.MCF-7 127 bp overlap
ChIP primary-breast-cancer_B1_DSG GSE114737.FOXA1.primary-breast-cancer_B1_DSG 197 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 304 bp overlap
ChIP DE DE-FOXA2-1 513 bp overlap
ChIP DE DE-FOXA2-2 373 bp overlap
FOXD2 1 dataset
Motif DE_60h DE_60h-FOXD2_MA0847.4 11 bp overlap
GATA1 1 dataset
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 145 bp overlap
GATA2 6 datasets
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
ChIP LNCaP GSE38391.GATA2.LNCaP 253 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 253 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 390 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 268 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 233 bp overlap
GATA3 16 datasets
ChIP BE2C GSE65664.GATA3.BE2C 249 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 218 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 390 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 346 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 320 bp overlap
ChIP MCF-7_DMSO GSE29073.GATA3.MCF-7_DMSO 128 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 291 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 207 bp overlap
ChIP MCF-7_E2 GSE40129.GATA3.MCF-7_E2 239 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 248 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 214 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 286 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 174 bp overlap
ChIP SK-N-SH ENCFF040SSB 339 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 416 bp overlap
ChIP thymocyte GSE71751.GATA3.thymocyte 284 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 515 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 359 bp overlap
GATA4 7 datasets
ChIP DE DE-GATA4-1 563 bp overlap
ChIP DE DE-GATA4-2 628 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 313 bp overlap
ChIP foregut GSE117136.GATA4.foregut 562 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 362 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 491 bp overlap
GATA6 14 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 281 bp overlap
ChIP DE DE-GATA6-1 586 bp overlap
ChIP DE DE-GATA6-2 634 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 330 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 402 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 401 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 585 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 392 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 511 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 494 bp overlap
ChIP foregut GSE117136.GATA6.foregut 472 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 278 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 474 bp overlap
GRHL2 2 datasets
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 290 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 185 bp overlap
Gata3 1 dataset
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
Hmx2 1 dataset
Motif DE_60h DE_60h-Hmx2_MA0897.2 15 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 205 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 359 bp overlap
MEF2D 2 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 202 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 324 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MSC 1 dataset
Motif DE_72h DE_72h-MSC_MA0665.1 10 bp overlap
MYOD1 1 dataset
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 267 bp overlap
Mecom 1 dataset
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 318 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 317 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 203 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 362 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 312 bp overlap
NFIC 1 dataset
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 240 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 388 bp overlap
Olig2 1 dataset
Motif DE_72h DE_72h-Olig2_MA1997.2 6 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 386 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 317 bp overlap
PHOX2A 1 dataset
Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 1 dataset
Motif DE_60h DE_60h-PHOX2B_MA0681.3 12 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 297 bp overlap
POU4F2 1 dataset
Motif DE_60h DE_60h-POU4F2_MA0683.2 15 bp overlap
Plagl1 1 dataset
Motif DE_60h DE_60h-Plagl1_MA1615.2 8 bp overlap
Ptf1A 1 dataset
Motif DE_72h DE_72h-Ptf1A_MA1619.2 8 bp overlap
RAD21 2 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 247 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 328 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 77 bp overlap
ChIP RH5 GSE155861.RBBP4.RH5 170 bp overlap
RELA 1 dataset
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 130 bp overlap
REST 3 datasets
ChIP LNCaP GSE119385.REST.LNCaP 201 bp overlap
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 124 bp overlap
ChIP PFSK-1 ENCFF668WMP 277 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 341 bp overlap
Rhox11 1 dataset
Motif DE_72h DE_72h-Rhox11_MA0629.2 9 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 490 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 206 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 375 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 535 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 404 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 492 bp overlap
SMARCB1 2 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 302 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 226 bp overlap
SPI1 2 datasets
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 175 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 123 bp overlap
Stat6 1 dataset
Motif DE_60h DE_60h-Stat6_MA0520.2 10 bp overlap
TEAD1 1 dataset
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 148 bp overlap
TEAD4 3 datasets
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 220 bp overlap
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 228 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 323 bp overlap
TFAP4 1 dataset
Motif DE_72h DE_72h-TFAP4_MA0691.1 10 bp overlap
TRPS1 1 dataset
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Tcf12 1 dataset
Motif DE_72h DE_72h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_72h DE_72h-Twist2_MA0633.3 6 bp overlap
YY1 1 dataset
ChIP SK-N-SH ENCSR000BSM.YY1.SK-N-SH 157 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 251 bp overlap
ZNF317 1 dataset
Motif DE_72h DE_72h-ZNF317_MA1593.2 8 bp overlap
ZNF354A 1 dataset
Motif DE_60h DE_60h-ZNF354A_MA1978.2 20 bp overlap
ZNF528 1 dataset
Motif DE_60h DE_60h-ZNF528_MA1597.1 17 bp overlap
ZNF85 1 dataset
Motif DE_72h DE_72h-ZNF85_MA1720.2 12 bp overlap