chr4 : 189,293,206 – 189,293,893
687 bp 93 TFs 0 linked genes
This 687 bp open chromatin element has no linked target genes and is bound by 93 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:189,288,206 – 189,298,893
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
93 transcription factors
Source
Cell type
ARNT::HIF1A 2 datasets
Motif DE_36h DE_36h-ARNTHIF1A_MA0259.2 5 bp overlap
Motif DE_60h DE_60h-ARNTHIF1A_MA0259.2 5 bp overlap
Atf3 2 datasets
Motif DE_36h DE_36h-Atf3_MA1988.2 7 bp overlap
Motif DE_60h DE_60h-Atf3_MA1988.2 7 bp overlap
BACH1 2 datasets
Motif DE_36h DE_36h-BACH1_MA1633.2 9 bp overlap
Motif DE_60h DE_60h-BACH1_MA1633.2 9 bp overlap
BATF 2 datasets
Motif DE_36h DE_36h-BATF_MA1634.2 7 bp overlap
Motif DE_60h DE_60h-BATF_MA1634.2 7 bp overlap
BATF3 2 datasets
Motif DE_36h DE_36h-BATF3_MA0835.3 7 bp overlap
Motif DE_60h DE_60h-BATF3_MA0835.3 7 bp overlap
BATF::JUN 2 datasets
Motif DE_36h DE_36h-BATFJUN_MA0462.3 7 bp overlap
Motif DE_60h DE_60h-BATFJUN_MA0462.3 7 bp overlap
BNC2 2 datasets
Motif DE_36h DE_36h-BNC2_MA1928.2 7 bp overlap
Motif DE_60h DE_60h-BNC2_MA1928.2 7 bp overlap
CRX 2 datasets
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 211 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 232 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 251 bp overlap
Crx 1 dataset
Motif DE_36h DE_36h-Crx_MA0467.3 6 bp overlap
DMRTA1 2 datasets
Motif DE_36h DE_36h-DMRTA1_MA1707.2 10 bp overlap
Motif DE_60h DE_60h-DMRTA1_MA1707.2 10 bp overlap
DMRTC2 2 datasets
Motif DE_36h DE_36h-DMRTC2_MA1479.2 11 bp overlap
Motif DE_60h DE_60h-DMRTC2_MA1479.2 11 bp overlap
DUX4 6 datasets
Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap
Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 193 bp overlap
Dmbx1 1 dataset
Motif DE_36h DE_36h-Dmbx1_MA0883.2 10 bp overlap
Dux 3 datasets
Motif DE_36h DE_36h-Dux_MA0611.3 11 bp overlap
Motif DE_48h DE_48h-Dux_MA0611.3 11 bp overlap
Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 306 bp overlap
EOMES 2 datasets
Motif DE_36h DE_36h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 388 bp overlap
ETV5::DRGX 3 datasets
Motif DE_36h DE_36h-ETV5DRGX_MA1944.2 12 bp overlap
Motif DE_48h DE_48h-ETV5DRGX_MA1944.2 12 bp overlap
Motif DE_60h DE_60h-ETV5DRGX_MA1944.2 12 bp overlap
FOS 2 datasets
Motif DE_36h DE_36h-FOS_MA0476.2 8 bp overlap
Motif DE_60h DE_60h-FOS_MA0476.2 8 bp overlap
FOS::JUN 2 datasets
Motif DE_36h DE_36h-FOSJUN_MA0099.4 9 bp overlap
Motif DE_60h DE_60h-FOSJUN_MA0099.4 9 bp overlap
FOS::JUNB 2 datasets
Motif DE_36h DE_36h-FOSJUNB_MA1134.2 9 bp overlap
Motif DE_60h DE_60h-FOSJUNB_MA1134.2 9 bp overlap
FOS::JUND 2 datasets
Motif DE_36h DE_36h-FOSJUND_MA1141.2 9 bp overlap
Motif DE_60h DE_60h-FOSJUND_MA1141.2 9 bp overlap
FOSB::JUNB 2 datasets
Motif DE_36h DE_36h-FOSBJUNB_MA1135.2 9 bp overlap
Motif DE_60h DE_60h-FOSBJUNB_MA1135.2 9 bp overlap
FOSL1 2 datasets
Motif DE_36h DE_36h-FOSL1_MA0477.3 9 bp overlap
Motif DE_60h DE_60h-FOSL1_MA0477.3 9 bp overlap
FOSL1::JUN 2 datasets
Motif DE_36h DE_36h-FOSL1JUN_MA1128.2 9 bp overlap
Motif DE_60h DE_60h-FOSL1JUN_MA1128.2 9 bp overlap
FOSL2 2 datasets
Motif DE_36h DE_36h-FOSL2_MA0478.2 10 bp overlap
Motif DE_60h DE_60h-FOSL2_MA0478.2 10 bp overlap
FOSL2::JUN 2 datasets
Motif DE_36h DE_36h-FOSL2JUN_MA1130.2 9 bp overlap
Motif DE_60h DE_60h-FOSL2JUN_MA1130.2 9 bp overlap
FOSL2::JUNB 2 datasets
Motif DE_36h DE_36h-FOSL2JUNB_MA1138.2 9 bp overlap
Motif DE_60h DE_60h-FOSL2JUNB_MA1138.2 9 bp overlap
FOSL2::JUND 2 datasets
Motif DE_36h DE_36h-FOSL2JUND_MA1144.2 9 bp overlap
Motif DE_60h DE_60h-FOSL2JUND_MA1144.2 9 bp overlap
FOXA1 2 datasets
ChIP HEK293_i176m_TFS GSE123618.FOXA1.HEK293_i176m_TFS 137 bp overlap
ChIP HEK293_r261g_TFS GSE123618.FOXA1.HEK293_r261g_TFS 148 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 504 bp overlap
ChIP DE DE-FOXA2-2 546 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 547 bp overlap
ChIP DE DE-GATA4-2 556 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 499 bp overlap
ChIP DE DE-GATA6-2 604 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 264 bp overlap
GSC 1 dataset
Motif DE_36h DE_36h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_36h DE_36h-GSC2_MA0891.2 6 bp overlap
HDAC2 1 dataset
ChIP RH4_DMSO-6H_bioMerck GSE116344.HDAC2.RH4_DMSO-6H_bioMerck 158 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 262 bp overlap
JUN::JUNB 2 datasets
Motif DE_36h DE_36h-JUNJUNB_MA1132.2 8 bp overlap
Motif DE_60h DE_60h-JUNJUNB_MA1132.2 8 bp overlap
JUNB 2 datasets
Motif DE_36h DE_36h-JUNB_MA0490.3 9 bp overlap
Motif DE_60h DE_60h-JUNB_MA0490.3 9 bp overlap
JUND 2 datasets
Motif DE_36h DE_36h-JUND_MA0491.3 9 bp overlap
Motif DE_60h DE_60h-JUND_MA0491.3 9 bp overlap
Jun 2 datasets
Motif DE_36h DE_36h-Jun_MA0489.3 8 bp overlap
Motif DE_60h DE_60h-Jun_MA0489.3 8 bp overlap
KLF6 2 datasets
Motif DE_36h DE_36h-KLF6_MA1517.2 9 bp overlap
Motif DE_60h DE_60h-KLF6_MA1517.2 9 bp overlap
KLF9 2 datasets
Motif DE_36h DE_36h-KLF9_MA1107.3 11 bp overlap
Motif DE_60h DE_60h-KLF9_MA1107.3 11 bp overlap
LHX6 2 datasets
Motif DE_36h DE_36h-LHX6_MA0658.2 8 bp overlap
Motif DE_60h DE_60h-LHX6_MA0658.2 8 bp overlap
MEIS1 4 datasets
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MGA 3 datasets
Motif DE_36h DE_36h-MGA_MA0801.1 8 bp overlap
Motif DE_36h DE_36h-MGA_MA0801.1 8 bp overlap
Motif DE_60h DE_60h-MGA_MA0801.1 8 bp overlap
MXI1 2 datasets
Motif DE_36h DE_36h-MXI1_MA1108.3 6 bp overlap
Motif DE_48h DE_48h-MXI1_MA1108.3 6 bp overlap
MZF1 1 dataset
Motif DE_36h DE_36h-MZF1_MA0056.3 8 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 227 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 475 bp overlap
NFATC3 2 datasets
Motif DE_36h DE_36h-NFATC3_MA0625.3 6 bp overlap
Motif DE_60h DE_60h-NFATC3_MA0625.3 6 bp overlap
NFIA 2 datasets
Motif DE_36h DE_36h-NFIA_MA0670.2 6 bp overlap
Motif DE_60h DE_60h-NFIA_MA0670.2 6 bp overlap
NFIL3 3 datasets
Motif DE_36h DE_36h-NFIL3_MA0025.3 9 bp overlap
Motif DE_48h DE_48h-NFIL3_MA0025.3 9 bp overlap
Motif DE_60h DE_60h-NFIL3_MA0025.3 9 bp overlap
NFIX 2 datasets
Motif DE_36h DE_36h-NFIX_MA0671.2 6 bp overlap
Motif DE_60h DE_60h-NFIX_MA0671.2 6 bp overlap
NFYA 5 datasets
Motif DE_36h DE_36h-NFYA_MA0060.4 8 bp overlap
Motif DE_36h DE_36h-NFYA_MA0060.4 8 bp overlap
Motif DE_48h DE_48h-NFYA_MA0060.4 8 bp overlap
Motif DE_60h DE_60h-NFYA_MA0060.4 8 bp overlap
Motif DE_60h DE_60h-NFYA_MA0060.4 8 bp overlap
NFYC 5 datasets
Motif DE_36h DE_36h-NFYC_MA1644.2 7 bp overlap
Motif DE_36h DE_36h-NFYC_MA1644.2 7 bp overlap
Motif DE_48h DE_48h-NFYC_MA1644.2 7 bp overlap
Motif DE_60h DE_60h-NFYC_MA1644.2 7 bp overlap
Motif DE_60h DE_60h-NFYC_MA1644.2 7 bp overlap
NR1D2 2 datasets
Motif DE_36h DE_36h-NR1D2_MA1532.2 15 bp overlap
Motif DE_60h DE_60h-NR1D2_MA1532.2 15 bp overlap
NR3C1 1 dataset
ChIP MCF-10A_EGF_DEX_60min GSE102355.NR3C1.MCF-10A_EGF_DEX_60min 222 bp overlap
Nfatc1 2 datasets
Motif DE_36h DE_36h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_60h DE_60h-Nfatc1_MA0624.3 6 bp overlap
OTX1 1 dataset
Motif DE_36h DE_36h-OTX1_MA0711.2 6 bp overlap
OTX2 2 datasets
Motif DE_36h DE_36h-OTX2_MA0712.3 7 bp overlap
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 261 bp overlap
PAX3 2 datasets
Motif DE_36h DE_36h-PAX3_MA0780.1 10 bp overlap
Motif DE_60h DE_60h-PAX3_MA0780.1 10 bp overlap
PBX1 2 datasets
Motif DE_36h DE_36h-PBX1_MA0070.2 9 bp overlap
Motif DE_60h DE_60h-PBX1_MA0070.2 9 bp overlap
PITX1 1 dataset
Motif DE_36h DE_36h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_36h DE_36h-PITX3_MA0714.2 6 bp overlap
PRDM9 3 datasets
Motif DE_36h DE_36h-PRDM9_MA1723.2 20 bp overlap
Motif DE_48h DE_48h-PRDM9_MA1723.2 20 bp overlap
Motif DE_60h DE_60h-PRDM9_MA1723.2 20 bp overlap
Pax7 2 datasets
Motif DE_36h DE_36h-Pax7_MA0680.3 10 bp overlap
Motif DE_60h DE_60h-Pax7_MA0680.3 10 bp overlap
Prdm4 2 datasets
Motif DE_36h DE_36h-Prdm4_MA1647.3 11 bp overlap
Motif DE_60h DE_60h-Prdm4_MA1647.3 11 bp overlap
RBPJ 2 datasets
Motif DE_36h DE_36h-RBPJ_MA1116.2 6 bp overlap
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
RHOXF1 1 dataset
Motif DE_36h DE_36h-RHOXF1_MA0719.2 6 bp overlap
SIX2 2 datasets
Motif DE_36h DE_36h-SIX2_MA1119.2 11 bp overlap
Motif DE_60h DE_60h-SIX2_MA1119.2 11 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 403 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 395 bp overlap
SOX18 1 dataset
Motif DE_36h DE_36h-SOX18_MA1563.2 8 bp overlap
SOX4 1 dataset
Motif DE_36h DE_36h-SOX4_MA0867.3 8 bp overlap
SOX8 1 dataset
Motif DE_36h DE_36h-SOX8_MA0868.3 7 bp overlap
SOX9 1 dataset
Motif DE_36h DE_36h-SOX9_MA0077.2 8 bp overlap
SP5 3 datasets
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
SPI1 2 datasets
ChIP HL-60 ENCFF645GBT 218 bp overlap
ChIP NCI-H929 GSE56857.SPI1.NCI-H929 120 bp overlap
SREBF1 1 dataset
Motif DE_36h DE_36h-SREBF1_MA0595.1 10 bp overlap
SREBF2 1 dataset
Motif DE_36h DE_36h-SREBF2_MA0596.1 10 bp overlap
Sox5 1 dataset
Motif DE_36h DE_36h-Sox5_MA0087.3 8 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 180 bp overlap
TBX21 2 datasets
Motif DE_36h DE_36h-TBX21_MA0690.3 10 bp overlap
Motif DE_60h DE_60h-TBX21_MA0690.3 10 bp overlap
TBX4 2 datasets
Motif DE_36h DE_36h-TBX4_MA0806.1 8 bp overlap
Motif DE_60h DE_60h-TBX4_MA0806.1 8 bp overlap
THRB 2 datasets
Motif DE_36h DE_36h-THRB_MA1574.2 13 bp overlap
Motif DE_60h DE_60h-THRB_MA1574.2 13 bp overlap
VENTX 2 datasets
Motif DE_36h DE_36h-VENTX_MA0724.1 9 bp overlap
Motif DE_60h DE_60h-VENTX_MA0724.1 9 bp overlap
ZKSCAN5 3 datasets
Motif DE_36h DE_36h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_48h DE_48h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_60h DE_60h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF263 3 datasets
Motif DE_36h DE_36h-ZNF263_MA0528.3 7 bp overlap
Motif DE_48h DE_48h-ZNF263_MA0528.3 7 bp overlap
Motif DE_60h DE_60h-ZNF263_MA0528.3 7 bp overlap
ZNF416 2 datasets
Motif DE_36h DE_36h-ZNF416_MA1979.2 10 bp overlap
Motif DE_60h DE_60h-ZNF416_MA1979.2 10 bp overlap
ZNF675 2 datasets
Motif DE_36h DE_36h-ZNF675_MA1714.2 19 bp overlap
Motif DE_60h DE_60h-ZNF675_MA1714.2 19 bp overlap
ZSCAN4 2 datasets
Motif DE_36h DE_36h-ZSCAN4_MA1155.1 15 bp overlap
Motif DE_60h DE_60h-ZSCAN4_MA1155.1 15 bp overlap
Zfp335 2 datasets
Motif DE_36h DE_36h-Zfp335_MA2002.2 7 bp overlap
Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap
Zfp809 2 datasets
Motif DE_36h DE_36h-Zfp809_MA2125.1 9 bp overlap
Motif DE_60h DE_60h-Zfp809_MA2125.1 9 bp overlap
Zic2 2 datasets
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap
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