chr4 : 138,696,080 – 138,696,701
621 bp 90 TFs 0 linked genes
This 621 bp open chromatin element has no linked target genes and is bound by 90 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:138,691,080 – 138,701,701
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
90 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 323 bp overlap
ChIP K562 ENCFF938UXQ 213 bp overlap
BARHL1 3 datasets
Motif DE_36h DE_36h-BARHL1_MA0877.4 6 bp overlap
Motif DE_60h DE_60h-BARHL1_MA0877.4 6 bp overlap
Motif DE_72h DE_72h-BARHL1_MA0877.4 6 bp overlap
BARHL2 3 datasets
Motif DE_36h DE_36h-BARHL2_MA0635.2 6 bp overlap
Motif DE_60h DE_60h-BARHL2_MA0635.2 6 bp overlap
Motif DE_72h DE_72h-BARHL2_MA0635.2 6 bp overlap
BCL11A 5 datasets
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 53 bp overlap
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 53 bp overlap
ChIP CD34_Day7_30min GSE104676.BCL11A.CD34_Day7_30min 119 bp overlap
ChIP CD34_Day7_60min GSE104676.BCL11A.CD34_Day7_60min 97 bp overlap
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 118 bp overlap
BRD4 1 dataset
ChIP HFOB_DIFF GSE82295.BRD4.HFOB_DIFF 176 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 324 bp overlap
ChIP K562 ENCFF963TXY 125 bp overlap
CBFA2T3 3 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 407 bp overlap
ChIP K-562 GSE142227.CBFA2T3.K-562 329 bp overlap
ChIP K562 ENCFF673OEZ 341 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 250 bp overlap
CDK8 1 dataset
ChIP SET-2 GSE65138.CDK8.SET-2 169 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 112 bp overlap
CUX1 1 dataset
Motif DE_72h DE_72h-CUX1_MA0754.3 9 bp overlap
Crx 1 dataset
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
Dux 4 datasets
Motif DE_36h DE_36h-Dux_MA0611.3 11 bp overlap
Motif DE_48h DE_48h-Dux_MA0611.3 11 bp overlap
Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap
Motif DE_72h DE_72h-Dux_MA0611.3 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 322 bp overlap
ERF::FOXO1 1 dataset
Motif DE_48h DE_48h-ERFFOXO1_MA1936.2 12 bp overlap
ETV5::FOXO1 1 dataset
Motif DE_48h DE_48h-ETV5FOXO1_MA1947.2 10 bp overlap
FLI1::FOXI1 1 dataset
Motif DE_48h DE_48h-FLI1FOXI1_MA1950.2 11 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 590 bp overlap
ChIP DE DE-FOXA2-2 528 bp overlap
FOXH1 2 datasets
Motif DE_48h DE_48h-FOXH1_MA0479.2 8 bp overlap
Motif DE_48h DE_48h-FOXH1_MA0479.2 8 bp overlap
FOXO1::ELF1 1 dataset
Motif DE_48h DE_48h-FOXO1ELF1_MA1953.2 13 bp overlap
FOXO1::ELK3 1 dataset
Motif DE_48h DE_48h-FOXO1ELK3_MA1955.2 13 bp overlap
FOXO1::FLI1 1 dataset
Motif DE_48h DE_48h-FOXO1FLI1_MA1956.2 13 bp overlap
Foxj2 1 dataset
Motif DE_48h DE_48h-Foxj2_MA0614.1 8 bp overlap
GATA1 8 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 230 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 251 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 169 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 127 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 240 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 228 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 153 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 291 bp overlap
GATA1::TAL1 4 datasets
Motif DE_36h DE_36h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_48h DE_48h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_60h DE_60h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
GATA2 2 datasets
ChIP TF1 GSE73207.GATA2.TF1 363 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 91 bp overlap
GATA4 6 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 183 bp overlap
ChIP DE DE-GATA4-1 584 bp overlap
ChIP DE DE-GATA4-2 621 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 367 bp overlap
ChIP foregut GSE117136.GATA4.foregut 493 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 319 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 566 bp overlap
ChIP DE DE-GATA6-2 621 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 507 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 496 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 507 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 549 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 534 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 536 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 418 bp overlap
ChIP foregut GSE117136.GATA6.foregut 453 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 406 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 299 bp overlap
GSC 1 dataset
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR387UWP.HDAC1.K-562 298 bp overlap
HDAC2 2 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 294 bp overlap
ChIP K562 ENCFF744ALD 339 bp overlap
HOXC6 1 dataset
ChIP 22Rv1 GSE129951.HOXC6.22Rv1 384 bp overlap
KDM1A 6 datasets
ChIP K-562 GSE117944.KDM1A.K-562 236 bp overlap
ChIP K-562 ENCSR908CMW.KDM1A.K-562 342 bp overlap
ChIP K-562 ENCSR360HRA.KDM1A.K-562 297 bp overlap
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 255 bp overlap
ChIP K562 ENCFF128TYE 365 bp overlap
ChIP K562 ENCFF133OLU 295 bp overlap
KLF1 4 datasets
Motif DE_36h DE_36h-KLF1_MA0493.3 8 bp overlap
Motif DE_48h DE_48h-KLF1_MA0493.3 8 bp overlap
Motif DE_60h DE_60h-KLF1_MA0493.3 8 bp overlap
Motif DE_72h DE_72h-KLF1_MA0493.3 8 bp overlap
KLF16 2 datasets
ChIP K-562 ENCSR760UVO.KLF16.K-562 260 bp overlap
ChIP K562 ENCFF464PIV 329 bp overlap
KLF2 4 datasets
Motif DE_36h DE_36h-KLF2_MA1515.2 8 bp overlap
Motif DE_48h DE_48h-KLF2_MA1515.2 8 bp overlap
Motif DE_60h DE_60h-KLF2_MA1515.2 8 bp overlap
Motif DE_72h DE_72h-KLF2_MA1515.2 8 bp overlap
KLF4 4 datasets
Motif DE_36h DE_36h-KLF4_MA0039.5 8 bp overlap
Motif DE_48h DE_48h-KLF4_MA0039.5 8 bp overlap
Motif DE_60h DE_60h-KLF4_MA0039.5 8 bp overlap
Motif DE_72h DE_72h-KLF4_MA0039.5 8 bp overlap
KLF5 4 datasets
Motif DE_36h DE_36h-KLF5_MA0599.1 10 bp overlap
Motif DE_48h DE_48h-KLF5_MA0599.1 10 bp overlap
Motif DE_60h DE_60h-KLF5_MA0599.1 10 bp overlap
Motif DE_72h DE_72h-KLF5_MA0599.1 10 bp overlap
KLF6 4 datasets
Motif DE_36h DE_36h-KLF6_MA1517.2 9 bp overlap
Motif DE_48h DE_48h-KLF6_MA1517.2 9 bp overlap
Motif DE_60h DE_60h-KLF6_MA1517.2 9 bp overlap
Motif DE_72h DE_72h-KLF6_MA1517.2 9 bp overlap
LDB1 2 datasets
ChIP HEP GSE52637.LDB1.HEP 219 bp overlap
ChIP K-562 GSE142227.LDB1.K-562 348 bp overlap
LHX6 4 datasets
Motif DE_36h DE_36h-LHX6_MA0658.2 8 bp overlap
Motif DE_48h DE_48h-LHX6_MA0658.2 8 bp overlap
Motif DE_60h DE_60h-LHX6_MA0658.2 8 bp overlap
Motif DE_72h DE_72h-LHX6_MA0658.2 8 bp overlap
MYF6 4 datasets
Motif DE_36h DE_36h-MYF6_MA0667.1 10 bp overlap
Motif DE_48h DE_48h-MYF6_MA0667.1 10 bp overlap
Motif DE_60h DE_60h-MYF6_MA0667.1 10 bp overlap
Motif DE_72h DE_72h-MYF6_MA0667.1 10 bp overlap
NANOG 6 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 116 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 415 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 376 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 621 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 561 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 297 bp overlap
NCOR1 3 datasets
ChIP K-562 ENCSR910JAI.NCOR1.K-562 281 bp overlap
ChIP K-562 ENCSR798ILC.NCOR1.K-562 244 bp overlap
ChIP K562 ENCFF788MPU 360 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 255 bp overlap
NR2F1 1 dataset
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 269 bp overlap
NR2F2 2 datasets
ChIP K-562 ENCSR000BRS.NR2F2.K-562 266 bp overlap
ChIP K562 ENCFF004YPK 391 bp overlap
NR2F6 2 datasets
ChIP K-562 ENCSR707QWA.NR2F6.K-562 250 bp overlap
ChIP K562 ENCFF674RQA 443 bp overlap
NR4A1 4 datasets
Motif DE_36h DE_36h-NR4A1_MA1112.3 8 bp overlap
Motif DE_48h DE_48h-NR4A1_MA1112.3 8 bp overlap
Motif DE_60h DE_60h-NR4A1_MA1112.3 8 bp overlap
Motif DE_72h DE_72h-NR4A1_MA1112.3 8 bp overlap
NR4A2 4 datasets
Motif DE_36h DE_36h-NR4A2_MA0160.3 8 bp overlap
Motif DE_48h DE_48h-NR4A2_MA0160.3 8 bp overlap
Motif DE_60h DE_60h-NR4A2_MA0160.3 8 bp overlap
Motif DE_72h DE_72h-NR4A2_MA0160.3 8 bp overlap
OSR2 2 datasets
Motif DE_48h DE_48h-OSR2_MA1646.2 8 bp overlap
Motif DE_60h DE_60h-OSR2_MA1646.2 8 bp overlap
OTX1 1 dataset
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
PITX1 1 dataset
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
PML 1 dataset
ChIP K-562 ENCSR000BQY.PML.K-562 180 bp overlap
POU1F1 4 datasets
Motif DE_36h DE_36h-POU1F1_MA0784.3 14 bp overlap
Motif DE_48h DE_48h-POU1F1_MA0784.3 14 bp overlap
Motif DE_60h DE_60h-POU1F1_MA0784.3 14 bp overlap
Motif DE_72h DE_72h-POU1F1_MA0784.3 14 bp overlap
POU5F1 2 datasets
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 561 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 279 bp overlap
PRDM14 1 dataset
ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 250 bp overlap
RCOR1 1 dataset
ChIP K562 ENCFF216EEJ 297 bp overlap
RHOXF1 1 dataset
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
RLF 1 dataset
ChIP K-562 ENCSR718SDE.RLF.K-562 226 bp overlap
SATB1 1 dataset
ChIP MCF-10A_dHD GSE123292.SATB1.MCF-10A_dHD 400 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 213 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 621 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 495 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 518 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 481 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 484 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 495 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 519 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 529 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 255 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 189 bp overlap
SMARCB1 1 dataset
ChIP proliferating-human-fibroblast_ASO_LINC GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_LINC 183 bp overlap
SOX14 4 datasets
Motif DE_36h DE_36h-SOX14_MA1562.2 9 bp overlap
Motif DE_48h DE_48h-SOX14_MA1562.2 9 bp overlap
Motif DE_60h DE_60h-SOX14_MA1562.2 9 bp overlap
Motif DE_72h DE_72h-SOX14_MA1562.2 9 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 344 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 521 bp overlap
SOX18 4 datasets
Motif DE_36h DE_36h-SOX18_MA1563.2 8 bp overlap
Motif DE_48h DE_48h-SOX18_MA1563.2 8 bp overlap
Motif DE_60h DE_60h-SOX18_MA1563.2 8 bp overlap
Motif DE_72h DE_72h-SOX18_MA1563.2 8 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 248 bp overlap
ChIP K562 ENCFF059YCJ 381 bp overlap
SOX9 4 datasets
Motif DE_36h DE_36h-SOX9_MA0077.2 8 bp overlap
Motif DE_48h DE_48h-SOX9_MA0077.2 8 bp overlap
Motif DE_60h DE_60h-SOX9_MA0077.2 8 bp overlap
Motif DE_72h DE_72h-SOX9_MA0077.2 8 bp overlap
STAT5A 2 datasets
ChIP K-562 ENCSR000BRR.STAT5A.K-562 177 bp overlap
ChIP K562 ENCFF226BTJ 336 bp overlap
Sox17 4 datasets
Motif DE_36h DE_36h-Sox17_MA0078.3 10 bp overlap
Motif DE_48h DE_48h-Sox17_MA0078.3 10 bp overlap
Motif DE_60h DE_60h-Sox17_MA0078.3 10 bp overlap
Motif DE_72h DE_72h-Sox17_MA0078.3 10 bp overlap
Sox7 4 datasets
Motif DE_36h DE_36h-Sox7_MA2095.1 10 bp overlap
Motif DE_48h DE_48h-Sox7_MA2095.1 10 bp overlap
Motif DE_60h DE_60h-Sox7_MA2095.1 10 bp overlap
Motif DE_72h DE_72h-Sox7_MA2095.1 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 231 bp overlap
TAL1 13 datasets
ChIP CD34 GSE52924.TAL1.CD34 161 bp overlap
ChIP HSPC-CD34pos GSE93372.TAL1.HSPC-CD34pos 119 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 306 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 258 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 211 bp overlap
ChIP K-562_MYO1D-Non-hub_KO GSE107726.TAL1.K-562_MYO1D-Non-hub_KO 199 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 303 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 177 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 287 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 233 bp overlap
ChIP K562 ENCFF620GMX 123 bp overlap
ChIP K562 ENCFF661CCK 277 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 269 bp overlap
TCF12 1 dataset
ChIP K-562 ENCSR744WOO.TCF12.K-562 202 bp overlap
TCF3 2 datasets
ChIP K-562 ENCSR970OJY.TCF3.K-562 195 bp overlap
ChIP K562 ENCFF319QZT 374 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 131 bp overlap
TFAP2A 4 datasets
Motif DE_36h DE_36h-TFAP2A_MA0810.2 11 bp overlap
Motif DE_48h DE_48h-TFAP2A_MA0810.2 11 bp overlap
Motif DE_60h DE_60h-TFAP2A_MA0810.2 11 bp overlap
Motif DE_72h DE_72h-TFAP2A_MA0810.2 11 bp overlap
TFAP2B 4 datasets
Motif DE_36h DE_36h-TFAP2B_MA0811.2 11 bp overlap
Motif DE_48h DE_48h-TFAP2B_MA0811.2 11 bp overlap
Motif DE_60h DE_60h-TFAP2B_MA0811.2 11 bp overlap
Motif DE_72h DE_72h-TFAP2B_MA0811.2 11 bp overlap
TFAP2C 4 datasets
Motif DE_36h DE_36h-TFAP2C_MA0524.3 11 bp overlap
Motif DE_48h DE_48h-TFAP2C_MA0524.3 11 bp overlap
Motif DE_60h DE_60h-TFAP2C_MA0524.3 11 bp overlap
Motif DE_72h DE_72h-TFAP2C_MA0524.3 11 bp overlap
ZBTB26 3 datasets
Motif DE_36h DE_36h-ZBTB26_MA1579.2 8 bp overlap
Motif DE_60h DE_60h-ZBTB26_MA1579.2 8 bp overlap
Motif DE_72h DE_72h-ZBTB26_MA1579.2 8 bp overlap
ZNF354C 1 dataset
Motif DE_48h DE_48h-ZNF354C_MA0130.1 6 bp overlap
ZNF382 4 datasets
Motif DE_36h DE_36h-ZNF382_MA1594.1 24 bp overlap
Motif DE_48h DE_48h-ZNF382_MA1594.1 24 bp overlap
Motif DE_60h DE_60h-ZNF382_MA1594.1 24 bp overlap
Motif DE_72h DE_72h-ZNF382_MA1594.1 24 bp overlap
ZNF675 2 datasets
Motif DE_48h DE_48h-ZNF675_MA1714.2 19 bp overlap
Motif DE_60h DE_60h-ZNF675_MA1714.2 19 bp overlap
Huangfu Lab · Publications · Resources · Contact