chr4 : 136,203,207 – 136,203,553

346 bp 104 TFs 0 linked genes

This 346 bp open chromatin element has no linked target genes and is bound by 104 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

104 transcription factors

ALX3 1 dataset

Motif DE_12h DE_12h-ALX3_MA0634.2 6 bp overlap

ARGFX 1 dataset

Motif DE_12h DE_12h-ARGFX_MA1463.2 8 bp overlap

ARNT::HIF1A 1 dataset

Motif DE_12h DE_12h-ARNTHIF1A_MA0259.2 5 bp overlap

ASCL1 2 datasets

Motif DE_12h DE_12h-ASCL1_MA1100.3 8 bp overlap

Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap

Arx 1 dataset

Motif DE_12h DE_12h-Arx_MA0874.2 10 bp overlap

Ascl2 1 dataset

Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap

BCL11A 1 dataset

ChIP WA01 ENCSR000BMJ.BCL11A.WA01 135 bp overlap

BCOR 1 dataset

ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 282 bp overlap

BHLHE22 1 dataset

Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap

CDX2 4 datasets

ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 176 bp overlap

ChIP Caco-2_PROLIF GSE23436.CDX2.Caco-2_PROLIF 182 bp overlap

ChIP LS180 GSE31939.CDX2.LS180 176 bp overlap

ChIP LS180_125 GSE31939.CDX2.LS180_125 188 bp overlap

CEBPB 2 datasets

ChIP H1 ENCFF871PTR 134 bp overlap

ChIP WA01 ENCSR000EBV.CEBPB.WA01 82 bp overlap

DRGX 1 dataset

Motif DE_12h DE_12h-DRGX_MA1481.2 6 bp overlap

EMX1 1 dataset

Motif DE_12h DE_12h-EMX1_MA0612.3 6 bp overlap

EMX2 1 dataset

Motif DE_12h DE_12h-EMX2_MA0886.2 6 bp overlap

EN1 1 dataset

Motif DE_12h DE_12h-EN1_MA0027.3 6 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 219 bp overlap

EP300 2 datasets

ChIP H1 ENCFF927IYK 280 bp overlap

ChIP WA01 ENCSR000BKK.EP300.WA01 168 bp overlap

ESX1 1 dataset

Motif DE_12h DE_12h-ESX1_MA0644.3 7 bp overlap

ETV5::FIGLA 1 dataset

Motif DE_12h DE_12h-ETV5FIGLA_MA1945.2 14 bp overlap

EVX1 1 dataset

Motif DE_12h DE_12h-EVX1_MA0887.2 6 bp overlap

EVX2 1 dataset

Motif DE_12h DE_12h-EVX2_MA0888.2 6 bp overlap

EZH2 1 dataset

ChIP neural progenitor cell ENCFF018MKA 346 bp overlap

FERD3L 1 dataset

Motif DE_12h DE_12h-FERD3L_MA1485.1 14 bp overlap

FOXA1 11 datasets

ChIP A-549 ENCSR000BRD.FOXA1.A-549 300 bp overlap

ChIP A-549 ENCSR000BPX.FOXA1.A-549 296 bp overlap

ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 289 bp overlap

ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 246 bp overlap

ChIP LS180 GSE140533.FOXA1.LS180 250 bp overlap

ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 105 bp overlap

ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 247 bp overlap

ChIP PDAC GSE64557.FOXA1.PDAC 273 bp overlap

ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 167 bp overlap

ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 229 bp overlap

ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 206 bp overlap

FOXA2 10 datasets

ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 275 bp overlap

ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 346 bp overlap

ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 346 bp overlap

ChIP DE DE-FOXA2-1 346 bp overlap

ChIP DE DE-FOXA2-2 346 bp overlap

ChIP HepG2 ENCFF533COJ 297 bp overlap

ChIP HepG2 ENCFF570ABM 292 bp overlap

ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 207 bp overlap

ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 346 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 195 bp overlap

FOXP1 1 dataset

ChIP H9 GSE31006.FOXP1.H9 223 bp overlap

FOXP4 1 dataset

ChIP WTC11 ENCFF708TAF 346 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 247 bp overlap

ChIP DE DE-GATA4-2 295 bp overlap

GATA6 2 datasets

ChIP DE DE-GATA6-1 255 bp overlap

ChIP DE DE-GATA6-2 285 bp overlap

GLIS3 1 dataset

ChIP H9_plus GSE109562.GLIS3.H9_plus 240 bp overlap

GSX1 1 dataset

Motif DE_12h DE_12h-GSX1_MA0892.2 6 bp overlap

GSX2 1 dataset

Motif DE_12h DE_12h-GSX2_MA0893.3 7 bp overlap

HNF4A 2 datasets

ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 214 bp overlap

ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 128 bp overlap

HOXA1 1 dataset

Motif DE_12h DE_12h-HOXA1_MA1495.2 6 bp overlap

HOXA10 1 dataset

Motif DE_12h DE_12h-HOXA10_MA0899.2 9 bp overlap

HOXA2 1 dataset

Motif DE_12h DE_12h-HOXA2_MA0900.3 6 bp overlap

HOXA3 1 dataset

Motif DE_12h DE_12h-HOXA3_MA2119.1 7 bp overlap

HOXA5 1 dataset

Motif DE_12h DE_12h-HOXA5_MA0158.2 8 bp overlap

HOXA6 1 dataset

Motif DE_12h DE_12h-HOXA6_MA1497.2 7 bp overlap

HOXB1 1 dataset

Motif DE_12h DE_12h-HOXB1_MA2093.1 7 bp overlap

HOXB2 1 dataset

Motif DE_12h DE_12h-HOXB2_MA0902.3 6 bp overlap

HOXB3 1 dataset

Motif DE_12h DE_12h-HOXB3_MA0903.2 6 bp overlap

HOXB5 1 dataset

Motif DE_12h DE_12h-HOXB5_MA0904.3 6 bp overlap

HOXB6 1 dataset

Motif DE_12h DE_12h-HOXB6_MA1500.2 7 bp overlap

HOXB7 1 dataset

Motif DE_12h DE_12h-HOXB7_MA1501.2 7 bp overlap

HOXB8 1 dataset

Motif DE_12h DE_12h-HOXB8_MA1502.2 7 bp overlap

HOXC8 1 dataset

Motif DE_12h DE_12h-HOXC8_MA1505.2 6 bp overlap

HOXD3 1 dataset

Motif DE_12h DE_12h-HOXD3_MA0912.2 8 bp overlap

HOXD8 1 dataset

Motif DE_12h DE_12h-HOXD8_MA0910.3 7 bp overlap

HOXD9 1 dataset

Motif DE_12h DE_12h-HOXD9_MA0913.3 9 bp overlap

ISX 1 dataset

Motif DE_12h DE_12h-ISX_MA0654.2 6 bp overlap

JUN 2 datasets

ChIP DE_D2 S02-DE-d2-JUN-exp1 311 bp overlap

ChIP ESC S24-ESC-d0-JUN-exp1 257 bp overlap

LHX5 1 dataset

Motif DE_12h DE_12h-LHX5_MA1519.2 7 bp overlap

LHX6 1 dataset

Motif DE_12h DE_12h-LHX6_MA0658.2 8 bp overlap

LMX1A 1 dataset

Motif DE_12h DE_12h-LMX1A_MA0702.3 7 bp overlap

LMX1B 1 dataset

Motif DE_12h DE_12h-LMX1B_MA0703.3 8 bp overlap

Lhx1 1 dataset

Motif DE_12h DE_12h-Lhx1_MA1518.3 10 bp overlap

Lhx4 1 dataset

Motif DE_12h DE_12h-Lhx4_MA0704.2 6 bp overlap

Lhx8 1 dataset

Motif DE_12h DE_12h-Lhx8_MA0705.2 6 bp overlap

MEOX1 1 dataset

Motif DE_12h DE_12h-MEOX1_MA0661.2 7 bp overlap

MEOX2 1 dataset

Motif DE_12h DE_12h-MEOX2_MA0706.2 7 bp overlap

MIXL1 1 dataset

Motif DE_12h DE_12h-MIXL1_MA0662.2 6 bp overlap

MNX1 1 dataset

Motif DE_12h DE_12h-MNX1_MA0707.3 6 bp overlap

MYOG 1 dataset

Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap

NANOG 11 datasets

ChIP GM23338 ENCFF065NZG 297 bp overlap

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 212 bp overlap

ChIP H1 ENCFF747ZPQ 114 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 346 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 346 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 267 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 346 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 346 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 346 bp overlap

ChIP hESC GSE20650.NANOG.hESC 247 bp overlap

ChIP hESC GSE18292.NANOG.hESC 95 bp overlap

NEUROG2 1 dataset

ChIP MRC-5_N_05DPT GSE75910.NEUROG2.MRC-5_N_05DPT 88 bp overlap

NHLH1 1 dataset

Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap

NHLH2 1 dataset

Motif DE_12h DE_12h-NHLH2_MA1529.2 16 bp overlap

NKX6-1 1 dataset

Motif DE_12h DE_12h-NKX6-1_MA0674.2 7 bp overlap

NKX6-2 1 dataset

Motif DE_12h DE_12h-NKX6-2_MA0675.2 6 bp overlap

NOTO 1 dataset

Motif DE_12h DE_12h-NOTO_MA0710.2 7 bp overlap

Neurod2 1 dataset

Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap

OTX2 1 dataset

ChIP WTC11 ENCFF634NAO 245 bp overlap

Olig2 1 dataset

Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap

PDX1 1 dataset

Motif DE_12h DE_12h-PDX1_MA0132.3 6 bp overlap

POU5F1 4 datasets

ChIP BG03 GSE21614.POU5F1.BG03 197 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 317 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 346 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 222 bp overlap

POU6F1 1 dataset

Motif DE_12h DE_12h-POU6F1_MA0628.2 6 bp overlap

PRRX1 1 dataset

Motif DE_12h DE_12h-PRRX1_MA0716.2 6 bp overlap

RAX2 1 dataset

Motif DE_12h DE_12h-RAX2_MA0717.2 6 bp overlap

SHOX 1 dataset

Motif DE_12h DE_12h-SHOX_MA0630.2 6 bp overlap

SMAD3 2 datasets

ChIP BG03 GSE21614.SMAD3.BG03 250 bp overlap

ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 183 bp overlap

SMARCA4 1 dataset

ChIP hiPSC GSE124903.SMARCA4.hiPSC 155 bp overlap

SOX2 1 dataset

ChIP hiPSC GSE56567.SOX2.hiPSC 325 bp overlap

SP1 1 dataset

ChIP H1 ENCFF263FUH 321 bp overlap

Shox2 1 dataset

Motif DE_12h DE_12h-Shox2_MA0720.2 6 bp overlap

T 2 datasets

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 307 bp overlap

ChIP H9_MESODERM GSE60606.T.H9_MESODERM 315 bp overlap

TCF12 3 datasets

ChIP A-549 ENCSR000BQQ.TCF12.A-549 180 bp overlap

ChIP H1 ENCFF203EBH 251 bp overlap

ChIP WA01 ENCSR000BIT.TCF12.WA01 259 bp overlap

TCF4 1 dataset

ChIP LS180_125 GSE31939.TCF4.LS180_125 65 bp overlap

TEAD1 2 datasets

ChIP WTC11 ENCFF502QUV 346 bp overlap

ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 159 bp overlap

TEAD4 2 datasets

ChIP ESC S26-ESC-d0-TEAD4-exp1 321 bp overlap

ChIP H1 ENCFF778PAX 245 bp overlap

TFAP4 1 dataset

ChIP DLD-1 GSE46935.TFAP4.DLD-1 346 bp overlap

TLX2 1 dataset

Motif DE_12h DE_12h-TLX2_MA1577.2 6 bp overlap

TRIM28 1 dataset

ChIP hESC GSE115387.TRIM28.hESC 227 bp overlap

Tcf12 1 dataset

Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap

Twist2 1 dataset

Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap

UNCX 1 dataset

Motif DE_12h DE_12h-UNCX_MA0721.2 6 bp overlap

VAX1 1 dataset

Motif DE_12h DE_12h-VAX1_MA0722.2 7 bp overlap

VAX2 1 dataset

Motif DE_12h DE_12h-VAX2_MA0723.3 6 bp overlap

VSX1 1 dataset

Motif DE_12h DE_12h-VSX1_MA0725.2 7 bp overlap

VSX2 1 dataset

Motif DE_12h DE_12h-VSX2_MA0726.2 7 bp overlap

ZNF143 1 dataset

ChIP WA01 ENCSR000EBW.ZNF143.WA01 122 bp overlap

ZNF213 1 dataset

Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap

ZNF93 1 dataset

Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap

mix-a 1 dataset

Motif DE_12h DE_12h-mix-a_MA0621.2 7 bp overlap