chr4 : 105,897,915 – 105,898,233
318 bp 54 TFs 1 linked gene
This 318 bp open chromatin element is linked to NPNT and is bound by 54 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
NPNT 2.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:105,892,915 – 105,903,233
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
54 transcription factors
Source
Cell type
AR 3 datasets
ChIP LNCaP GSE80256.AR.LNCaP 137 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 134 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 51 bp overlap
ARID1A 3 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 318 bp overlap
ChIP MCF-7_DCDT GSE123284.ARID1A.MCF-7_DCDT 82 bp overlap
ChIP MCF-7_JQ1 GSE123284.ARID1A.MCF-7_JQ1 224 bp overlap
ARID3A 1 dataset
ChIP HepG2 ENCFF341DES 75 bp overlap
ARNTL 1 dataset
ChIP HepG2 ENCFF217GCH 111 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 200 bp overlap
BRD4 4 datasets
ChIP HEK293T GSE39579.BRD4.HEK293T 121 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.BRD4.MCF-7_ARID1A-KO_4-OHT 198 bp overlap
ChIP MCF-7_parental GSE123284.BRD4.MCF-7_parental 318 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 318 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 113 bp overlap
CLOCK 1 dataset
ChIP BA40_3 GSE96659.CLOCK.BA40_3 70 bp overlap
CTCF 16 datasets
ChIP Peyer's patch ENCFF701KWW 99 bp overlap
ChIP Peyer's patch ENCFF828IDE 111 bp overlap
ChIP Peyers-patch ENCSR419ANE.CTCF.Peyers-patch 83 bp overlap
ChIP RWPE2 ENCFF911IEE 77 bp overlap
ChIP body of pancreas ENCFF128ALM 84 bp overlap
ChIP breast epithelium ENCFF080KNR 134 bp overlap
ChIP breast epithelium ENCFF341QWO 135 bp overlap
ChIP breast_epithelium ENCSR697YIN.CTCF.breast_epithelium 58 bp overlap
ChIP gastroesophageal sphincter ENCFF569YIT 103 bp overlap
ChIP lung ENCSR224WWI.CTCF.lung 93 bp overlap
ChIP prostate gland ENCFF655GBO 86 bp overlap
ChIP thyroid gland ENCFF300RYK 94 bp overlap
ChIP thyroid gland ENCFF631QRY 154 bp overlap
ChIP thyroid-gland ENCSR492ZIW.CTCF.thyroid-gland 105 bp overlap
ChIP thyroid-gland ENCSR145HBC.CTCF.thyroid-gland 66 bp overlap
ChIP thyroid-gland ENCSR033KMZ.CTCF.thyroid-gland 53 bp overlap
ESR1 2 datasets
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 101 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 65 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 67 bp overlap
ESRRA 2 datasets
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 63 bp overlap
ChIP HepG2 ENCFF033DVS 107 bp overlap
FOXA1 18 datasets
ChIP LNCaP_DHT24H GSE58428.FOXA1.LNCaP_DHT24H 318 bp overlap
ChIP MCF-7 ENCSR126YEB.FOXA1.MCF-7 77 bp overlap
ChIP MCF-7_DOX-neg GSE124654.FOXA1.MCF-7_DOX-neg 94 bp overlap
ChIP MCF-7_TamR GSE128445.FOXA1.MCF-7_TamR 103 bp overlap
ChIP MCF-7_estrogen_ab1 GSE112969.FOXA1.MCF-7_estrogen_ab1 52 bp overlap
ChIP MCF-7_vehicle_ab1 GSE112969.FOXA1.MCF-7_vehicle_ab1 55 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 84 bp overlap
ChIP ZR-75-1_estrogen_ab1 GSE112969.FOXA1.ZR-75-1_estrogen_ab1 107 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 56 bp overlap
ChIP ZR-75-1_vehicle_ab1 GSE112969.FOXA1.ZR-75-1_vehicle_ab1 107 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 62 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 56 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 63 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 59 bp overlap
ChIP breast-cancer_ENOB-2848 GSE128018.FOXA1.breast-cancer_ENOB-2848 249 bp overlap
ChIP breast-cancer_Veh-131 GSE128018.FOXA1.breast-cancer_Veh-131 288 bp overlap
ChIP breast_tumor_Male_13 GSE104399.FOXA1.breast_tumor_Male_13 53 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 152 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 96 bp overlap
ChIP DE DE-FOXA2-2 210 bp overlap
GATA3 1 dataset
ChIP MCF-7 ENCFF178GBS 161 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 97 bp overlap
ChIP DE DE-GATA4-2 181 bp overlap
ChIP foregut GSE117136.GATA4.foregut 78 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 147 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 69 bp overlap
ChIP DE DE-GATA6-2 118 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 53 bp overlap
ChIP OACP4-C GSE132680.GATA6.OACP4-C 220 bp overlap
ChIP foregut GSE117136.GATA6.foregut 77 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 82 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 69 bp overlap
HDAC1 1 dataset
ChIP HepG2 ENCFF304IEJ 80 bp overlap
HNF4A 1 dataset
ChIP GP5D GSE51234.HNF4A.GP5D 225 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 241 bp overlap
JUND 1 dataset
ChIP H1 ENCFF010YXS 86 bp overlap
KLF5 1 dataset
ChIP ESO-26 GSE132680.KLF5.ESO-26 111 bp overlap
LCORL 1 dataset
ChIP HepG2 ENCFF017FTI 70 bp overlap
MGA 1 dataset
ChIP HepG2 ENCFF057YJE 193 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 168 bp overlap
NCOR1 1 dataset
ChIP HepG2 ENCFF685NAH 81 bp overlap
NONO 1 dataset
ChIP HepG2 ENCFF361UQH 81 bp overlap
ONECUT1 1 dataset
ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 75 bp overlap
PAXIP1 1 dataset
ChIP HepG2 ENCFF526NOJ 57 bp overlap
PHF21A 1 dataset
ChIP HepG2 ENCFF525EUW 158 bp overlap
PITX1 1 dataset
ChIP HepG2 ENCFF468QTQ 51 bp overlap
POGK 1 dataset
ChIP HepG2 ENCFF029WNT 99 bp overlap
POGZ 1 dataset
ChIP HepG2 ENCFF153UUK 68 bp overlap
PROX1 1 dataset
ChIP HepG2 ENCFF016ZJS 65 bp overlap
RAD21 1 dataset
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 204 bp overlap
RNF2 2 datasets
ChIP K-562 ENCSR820GND.RNF2.K-562 115 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 226 bp overlap
SAP130 1 dataset
ChIP HepG2 ENCFF892EHZ 51 bp overlap
SKI 1 dataset
ChIP Hep-G2 ENCSR754MUD.SKI.Hep-G2 140 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 318 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 124 bp overlap
SMAD4 1 dataset
ChIP K562 ENCFF628RBP 119 bp overlap
SMARCA4 4 datasets
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 236 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.SMARCA4.MCF-7_ARID1A-KO_4-OHT_clone14 232 bp overlap
ChIP MCF-7_ARID1A-KO_clone14 GSE123284.SMARCA4.MCF-7_ARID1A-KO_clone14 74 bp overlap
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 95 bp overlap
SUZ12 1 dataset
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 202 bp overlap
TBX2 1 dataset
ChIP HepG2 ENCFF811TLA 182 bp overlap
ZMYM4 1 dataset
ChIP HepG2 ENCFF567SQY 112 bp overlap
ZNF217 1 dataset
ChIP HepG2 ENCFF455XGO 60 bp overlap
ZNF276 1 dataset
ChIP Hep-G2 ENCSR076KLJ.ZNF276.Hep-G2 137 bp overlap
ZNF280D 1 dataset
ChIP HepG2 ENCFF203BIA 84 bp overlap
ZNF319 2 datasets
ChIP K-562 ENCSR231PDA.ZNF319.K-562 199 bp overlap
ChIP K562 ENCFF561ZSB 98 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 206 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 164 bp overlap
ZNF48 1 dataset
ChIP HepG2 ENCFF362CDQ 140 bp overlap
ZNF512B 1 dataset
ChIP HepG2 ENCFF126PJB 93 bp overlap
ZNF596 2 datasets
ChIP HEK293 ENCFF854MGB 63 bp overlap
ChIP HEK293 ENCSR344SBD.ZNF596.HEK293 131 bp overlap
ZNF710 1 dataset
ChIP HepG2 ENCFF170JWO 120 bp overlap
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