chr4 : 95,798,734 – 95,799,167

433 bp 76 TFs 0 linked genes

This 433 bp open chromatin element has no linked target genes and is bound by 76 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

76 transcription factors

ATF2 1 dataset

ChIP WA01 ENCSR000BQU.ATF2.WA01 395 bp overlap

BACH2 1 dataset

Motif DE_12h DE_12h-BACH2_MA1101.3 11 bp overlap

BCL11A 2 datasets

ChIP WA01 ENCSR000BIP.BCL11A.WA01 120 bp overlap

ChIP WA01 ENCSR000BMJ.BCL11A.WA01 182 bp overlap

BCOR 1 dataset

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 170 bp overlap

CEBPB 2 datasets

ChIP H1 ENCFF871PTR 261 bp overlap

ChIP WA01 ENCSR000EBV.CEBPB.WA01 237 bp overlap

CHD2 1 dataset

ChIP WA01 ENCSR000EBT.CHD2.WA01 168 bp overlap

CHD7 2 datasets

ChIP H1 ENCFF126NLU 433 bp overlap

ChIP WA01 ENCSR000AVA.CHD7.WA01 160 bp overlap

CREB1 1 dataset

ChIP WA01 ENCSR000BSN.CREB1.WA01 207 bp overlap

CTCF 1 dataset

ChIP glioblastoma_GBM3565 GSE139416.CTCF.glioblastoma_GBM3565 211 bp overlap

CTNNB1 1 dataset

ChIP hESC_activinA_15h GSE99202.CTNNB1.hESC_activinA_15h 369 bp overlap

DUX4 1 dataset

Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap

E2F3 1 dataset

Motif DE_12h DE_12h-E2F3_MA0469.4 14 bp overlap

E2F4 1 dataset

Motif DE_12h DE_12h-E2F4_MA0470.3 13 bp overlap

E2F6 1 dataset

ChIP WA01 ENCSR000BSI.E2F6.WA01 128 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 242 bp overlap

EP300 1 dataset

ChIP WA01 ENCSR000BKK.EP300.WA01 207 bp overlap

EWSR1-FLI1 1 dataset

Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap

FEZF2 1 dataset

Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap

FIGLA 1 dataset

Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap

FOSL1::JUND 1 dataset

Motif DE_12h DE_12h-FOSL1JUND_MA1142.2 8 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 433 bp overlap

ChIP DE DE-FOXA2-2 416 bp overlap

GATA1::TAL1 1 dataset

Motif DE_12h DE_12h-GATA1TAL1_MA0140.3 17 bp overlap

GATA4 4 datasets

ChIP DE DE-GATA4-1 430 bp overlap

ChIP DE DE-GATA4-2 433 bp overlap

Motif DE_12h DE_12h-GATA4_MA0482.3 8 bp overlap

ChIP foregut GSE117136.GATA4.foregut 433 bp overlap

GATA5 1 dataset

Motif DE_12h DE_12h-GATA5_MA0766.3 8 bp overlap

GATA6 12 datasets

ChIP DE DE-GATA6-1 432 bp overlap

ChIP DE DE-GATA6-2 433 bp overlap

Motif DE_12h DE_12h-GATA6_MA1104.3 8 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 433 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 433 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 433 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 433 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 433 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 433 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 420 bp overlap

ChIP foregut GSE117136.GATA6.foregut 392 bp overlap

ChIP foregut_KO GSE117136.GATA6.foregut_KO 374 bp overlap

Gata3 1 dataset

Motif DE_12h DE_12h-Gata3_MA0037.5 8 bp overlap

IKZF2 1 dataset

Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap

JDP2 1 dataset

Motif DE_12h DE_12h-JDP2_MA0655.1 9 bp overlap

JUN 5 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 399 bp overlap

ChIP DE_D1 S13-DE-d1-JUN-exp1 264 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 423 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 371 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 433 bp overlap

JUND 1 dataset

Motif DE_12h DE_12h-JUND_MA0491.3 9 bp overlap

LEF1 1 dataset

ChIP hESC_WNT3A GSE64758.LEF1.hESC_WNT3A 326 bp overlap

MAFK 1 dataset

Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap

MAX 1 dataset

ChIP WA01 ENCSR000EUP.MAX.WA01 259 bp overlap

MEIS1 1 dataset

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

MORC2 1 dataset

ChIP H9 GSE95374.MORC2.H9 253 bp overlap

NANOG 11 datasets

ChIP GM23338 ENCFF065NZG 311 bp overlap

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 200 bp overlap

ChIP H1 ENCFF747ZPQ 241 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 433 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 375 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 433 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 433 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 433 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 407 bp overlap

ChIP hESC GSE20650.NANOG.hESC 275 bp overlap

ChIP hESC GSE18292.NANOG.hESC 214 bp overlap

NFIA 1 dataset

Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap

NFIX 2 datasets

Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap

Motif DE_12h DE_12h-NFIX_MA1528.2 14 bp overlap

NIPBL 2 datasets

ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 299 bp overlap

ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 393 bp overlap

NR1H4::RXRA 1 dataset

Motif DE_12h DE_12h-NR1H4RXRA_MA1146.2 13 bp overlap

NR4A1 1 dataset

Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap

NR4A2 1 dataset

Motif DE_12h DE_12h-NR4A2_MA0160.3 8 bp overlap

NR6A1 1 dataset

Motif DE_12h DE_12h-NR6A1_MA1541.2 14 bp overlap

OTX2 1 dataset

ChIP WTC11 ENCFF634NAO 245 bp overlap

POU5F1 7 datasets

ChIP H1 ENCFF698ZAP 205 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 433 bp overlap

ChIP WA01 ENCSR000BMU.POU5F1.WA01 251 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 193 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 433 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 233 bp overlap

ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 160 bp overlap

PPARA::RXRA 1 dataset

Motif DE_12h DE_12h-PPARARXRA_MA1148.2 17 bp overlap

Pou5f1::Sox2 1 dataset

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

Pparg::Rxra 1 dataset

Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap

SMAD2 1 dataset

ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 256 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 412 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 417 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 414 bp overlap

SMAD2_3 5 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 400 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 397 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 387 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 322 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 364 bp overlap

SMARCA4 2 datasets

ChIP hiPSC GSE124903.SMARCA4.hiPSC 229 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 202 bp overlap

SMARCC1 2 datasets

ChIP DE_D1 S15-DE-d1-BAF155-exp1 243 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 206 bp overlap

SNAI1 1 dataset

Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 262 bp overlap

SOX2 1 dataset

ChIP hiPSC GSE56567.SOX2.hiPSC 346 bp overlap

SP1 2 datasets

ChIP H1 ENCFF263FUH 321 bp overlap

ChIP WA01 ENCSR000BIR.SP1.WA01 240 bp overlap

SP4 1 dataset

ChIP WA01 ENCSR000BQV.SP4.WA01 183 bp overlap

SPIB 1 dataset

Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap

Six3 2 datasets

Motif DE_12h DE_12h-Six3_MA0631.2 11 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 203 bp overlap

TCF12 2 datasets

Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap

ChIP WA01 ENCSR000BIT.TCF12.WA01 163 bp overlap

TCF3 1 dataset

Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap

TCF7L1 1 dataset

Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap

TCF7L2 2 datasets

Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap

ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 200 bp overlap

TFAP2C 1 dataset

Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap

TP53 1 dataset

Motif DE_12h DE_12h-TP53_MA0106.3 18 bp overlap

TP73 1 dataset

Motif DE_12h DE_12h-TP73_MA0861.2 16 bp overlap

TRPS1 1 dataset

Motif DE_12h DE_12h-TRPS1_MA1970.2 8 bp overlap

YY1 1 dataset

ChIP WA01 ENCSR000BKD.YY1.WA01 127 bp overlap

ZEB1 1 dataset

Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap

ZNF211 1 dataset

Motif DE_12h DE_12h-ZNF211_MA1974.2 10 bp overlap

ZNF462 1 dataset

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 163 bp overlap

ZNF547 1 dataset

Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap

ZNF549 1 dataset

Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap

Zic2 1 dataset

Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap