chr4 : 87,152,397 – 87,152,978

581 bp 70 TFs 0 linked genes

This 581 bp open chromatin element has no linked target genes and is bound by 70 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

70 transcription factors

ARID2 1 dataset

ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 457 bp overlap

ATF2 1 dataset

Motif DE_12h DE_12h-ATF2_MA1632.2 10 bp overlap

ATF3 1 dataset

ChIP K-562 ENCSR028UIU.ATF3.K-562 268 bp overlap

BRD4 2 datasets

ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 192 bp overlap

ChIP hESC GSE33281.BRD4.hESC 75 bp overlap

CREBBP 1 dataset

ChIP retina_Hu33 GSE137311.CREBBP.retina_Hu33 196 bp overlap

CRX 1 dataset

ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 295 bp overlap

CTCF 4 datasets

Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap

ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 253 bp overlap

ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 195 bp overlap

ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 302 bp overlap

CTNNB1 1 dataset

ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 330 bp overlap

Cebpa 2 datasets

ChIP BLaER1 ENCFF364PUR 203 bp overlap

ChIP BLaER1 ENCFF460KDD 279 bp overlap

ELF1 1 dataset

Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap

ELF3 1 dataset

Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap

ERG 1 dataset

ChIP SKNO-1 GSE23730.ERG.SKNO-1 195 bp overlap

FOSL2 2 datasets

ChIP HepG2 ENCFF548CXY 301 bp overlap

ChIP HepG2 ENCFF796NIA 233 bp overlap

FOXA1 2 datasets

ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 225 bp overlap

ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 336 bp overlap

GATA2 1 dataset

ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 299 bp overlap

JUN 1 dataset

ChIP 786-O GSE86092.JUN.786-O 318 bp overlap

JUND 1 dataset

Motif DE_12h DE_12h-JUND_MA0492.2 11 bp overlap

KLF8 1 dataset

ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 218 bp overlap

KMT2A 1 dataset

ChIP HEK293T_C-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_C-term_shCtrl_TASP1-KO 213 bp overlap

L3MBTL2 2 datasets

ChIP HEK293T ENCFF482NJV 298 bp overlap

ChIP HEK293T ENCSR862PNL.L3MBTL2.HEK293T 141 bp overlap

MEF2D 1 dataset

ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 232 bp overlap

MEIS1 2 datasets

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

MEIS2 1 dataset

Motif DE_12h DE_12h-MEIS2_MA0774.1 8 bp overlap

MEIS3 1 dataset

Motif DE_12h DE_12h-MEIS3_MA0775.2 7 bp overlap

MYBL2 1 dataset

ChIP MCF-10A_ctrl GSE115787.MYBL2.MCF-10A_ctrl 91 bp overlap

MYC 2 datasets

ChIP CD34 GSE85488.MYC.CD34 69 bp overlap

ChIP CD34 GSE85488.MYC.CD34 111 bp overlap

MZF1 1 dataset

ChIP HEK293 ENCSR298QUH.MZF1.HEK293 306 bp overlap

NANOG 1 dataset

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 211 bp overlap

NFYB 2 datasets

Motif DE_12h DE_12h-NFYB_MA0502.3 9 bp overlap

NOTCH3 1 dataset

ChIP TALL-1_GSI GSE104261.NOTCH3.TALL-1_GSI 203 bp overlap

NRF1 4 datasets

ChIP K-562 ENCSR998AJK.NRF1.K-562 385 bp overlap

ChIP K-562 ENCSR494TDU.NRF1.K-562 356 bp overlap

ChIP K562 ENCFF689EWI 462 bp overlap

ChIP K562 ENCFF791UHF 506 bp overlap

NRL 1 dataset

ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 220 bp overlap

ONECUT1 4 datasets

ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 157 bp overlap

ChIP HepG2 ENCFF243FIR 214 bp overlap

ChIP liver ERP002306.ONECUT1.liver 154 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 213 bp overlap

OTX2 1 dataset

ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 360 bp overlap

PBX3 1 dataset

Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap

PKNOX1 1 dataset

ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 219 bp overlap

POLR2A 1 dataset

ChIP GM12891 ENCFF127ICP 460 bp overlap

POLR2G 3 datasets

ChIP K562 ENCFF047BLG 131 bp overlap

ChIP K562 ENCFF047BLG 574 bp overlap

ChIP K562 ENCFF648YPL 131 bp overlap

RARA::RXRA 1 dataset

Motif DE_12h DE_12h-RARARXRA_MA0159.1 17 bp overlap

RARA::RXRG 1 dataset

Motif DE_12h DE_12h-RARARXRG_MA1149.2 17 bp overlap

RBPJ 1 dataset

Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap

RELA 1 dataset

ChIP 786-O GSE86092.RELA.786-O 203 bp overlap

RORB 1 dataset

ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 342 bp overlap

RUNX1 1 dataset

ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 85 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 164 bp overlap

SMARCA4 1 dataset

ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 387 bp overlap

SMARCC1 1 dataset

ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 183 bp overlap

SOX8 1 dataset

ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 172 bp overlap

SS18 3 datasets

ChIP SYO-1 GSE108025.SS18.SYO-1 226 bp overlap

ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 396 bp overlap

ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 88 bp overlap

SUPT5H 2 datasets

ChIP MOLT-4_SNS GSE89384.SUPT5H.MOLT-4_SNS 186 bp overlap

ChIP U2OS_siMYC GSE115365.SUPT5H.U2OS_siMYC 438 bp overlap

TFAP2C 1 dataset

ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 59 bp overlap

YY1 2 datasets

ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 469 bp overlap

ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 348 bp overlap

ZBTB33 1 dataset

ChIP HepG2 ENCFF778UKV 254 bp overlap

ZBTB44 1 dataset

ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 108 bp overlap

ZIC1 1 dataset

Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap

ZIC4 1 dataset

Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap

ZIC5 1 dataset

Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap

ZKSCAN5 1 dataset

Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap

ZNF121 6 datasets

ChIP HEK293 ENCFF839FUF 313 bp overlap

ChIP HEK293 ENCSR224QDY.ZNF121.HEK293 269 bp overlap

ChIP HEK293 GSE76494.ZNF121.HEK293 283 bp overlap

ChIP Hep-G2 ENCSR945QEW.ZNF121.Hep-G2 207 bp overlap

ChIP HepG2 ENCFF343YSL 356 bp overlap

ChIP K562 ENCFF314GND 305 bp overlap

ZNF2 1 dataset

ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 406 bp overlap

ZNF257 1 dataset

Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap

ZNF322 1 dataset

ChIP HEK293 GSE76494.ZNF322.HEK293 112 bp overlap

ZNF341 1 dataset

Motif DE_12h DE_12h-ZNF341_MA1655.2 8 bp overlap

ZNF460 1 dataset

Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap

ZNF610 1 dataset

Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap

ZNF629 1 dataset

ChIP HEK293 ENCSR351NON.ZNF629.HEK293 503 bp overlap

Zfp335 1 dataset

Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap

Zic1::Zic2 1 dataset

Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap

Zic2 1 dataset

Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap

Zic3 1 dataset

Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap