chr4 : 86,472,460 86,473,001
541 bp 124 TFs 2 linked genes
This 541 bp open chromatin element is linked to MAPK10 and PTPN13 and is bound by 124 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
MAPK10 121.3 kb Distal Multiome
PTPN13 121.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:86,467,460 – 86,478,001
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
124 transcription factors
Source
Cell type
BHLHE23 1 dataset
Motif DE_12h DE_12h-BHLHE23_MA0817.2 10 bp overlap
DMRTA2 7 datasets
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
Motif DE_24h DE_24h-DMRTA2_MA1478.2 6 bp overlap
Motif DE_36h DE_36h-DMRTA2_MA1478.2 6 bp overlap
Motif DE_36h DE_36h-DMRTA2_MA1478.2 6 bp overlap
Motif DE_48h DE_48h-DMRTA2_MA1478.2 6 bp overlap
Dmrt1 3 datasets
Motif DE_12h DE_12h-Dmrt1_MA1603.2 9 bp overlap
Motif DE_36h DE_36h-Dmrt1_MA1603.2 9 bp overlap
Motif DE_48h DE_48h-Dmrt1_MA1603.2 9 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 255 bp overlap
EBF3 2 datasets
Motif DE_12h DE_12h-EBF3_MA1637.2 9 bp overlap
Motif DE_36h DE_36h-EBF3_MA1637.2 9 bp overlap
EHF 1 dataset
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
ELF1 1 dataset
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
ELF2 1 dataset
Motif DE_12h DE_12h-ELF2_MA1483.3 10 bp overlap
ELF3 1 dataset
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
EOMES 3 datasets
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
Motif DE_36h DE_36h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 225 bp overlap
ERF 1 dataset
Motif DE_12h DE_12h-ERF_MA0760.2 9 bp overlap
ERG 1 dataset
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 176 bp overlap
ETS1 1 dataset
Motif DE_12h DE_12h-ETS1_MA0098.4 9 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
ETV2 1 dataset
Motif DE_12h DE_12h-ETV2_MA0762.2 9 bp overlap
Ebf2 2 datasets
Motif DE_12h DE_12h-Ebf2_MA1604.2 9 bp overlap
Motif DE_36h DE_36h-Ebf2_MA1604.2 9 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
FLI1 1 dataset
Motif DE_12h DE_12h-FLI1_MA0475.3 9 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 405 bp overlap
ChIP DE DE-FOXA2-2 379 bp overlap
GABPA 1 dataset
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
GATA2 1 dataset
ChIP SKH1_RUNX1-EVI1_KD GSE87283.GATA2.SKH1_RUNX1-EVI1_KD 188 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 252 bp overlap
ChIP DE DE-GATA6-2 290 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 472 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 311 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 433 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 449 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 360 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
IRF1 1 dataset
ChIP K-562_EPZ GSE129380.IRF1.K-562_EPZ 173 bp overlap
IRF2 1 dataset
Motif DE_12h DE_12h-IRF2_MA0051.2 16 bp overlap
IRF4 1 dataset
Motif DE_12h DE_12h-IRF4_MA1419.2 14 bp overlap
IRF7 1 dataset
Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap
IRF8 1 dataset
Motif DE_12h DE_12h-IRF8_MA0652.2 13 bp overlap
IRF9 1 dataset
Motif DE_12h DE_12h-IRF9_MA0653.1 15 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 304 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 474 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 374 bp overlap
KLF17 1 dataset
Motif DE_12h DE_12h-KLF17_MA1514.2 14 bp overlap
LIN54 3 datasets
Motif DE_12h DE_12h-LIN54_MA0619.2 7 bp overlap
Motif DE_24h DE_24h-LIN54_MA0619.2 7 bp overlap
Motif DE_36h DE_36h-LIN54_MA0619.2 7 bp overlap
Lef1 1 dataset
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
MGA 2 datasets
Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap
Motif DE_36h DE_36h-MGA_MA0801.1 8 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 113 bp overlap
MYF5 1 dataset
Motif DE_12h DE_12h-MYF5_MA1641.2 8 bp overlap
MYOG 1 dataset
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
NANOG 8 datasets
ChIP GM23338 ENCFF065NZG 227 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 539 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 496 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 541 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 329 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 188 bp overlap
ChIP hESC GSE20650.NANOG.hESC 186 bp overlap
ChIP hESC GSE18292.NANOG.hESC 140 bp overlap
NKX2-4 2 datasets
Motif DE_12h DE_12h-NKX2-4_MA2003.2 8 bp overlap
Motif DE_36h DE_36h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 2 datasets
Motif DE_12h DE_12h-NKX2-8_MA0673.2 8 bp overlap
Motif DE_36h DE_36h-NKX2-8_MA0673.2 8 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
NR2F2 1 dataset
Motif DE_12h DE_12h-NR2F2_MA1111.2 7 bp overlap
NR3C1 1 dataset
ChIP SUP-B15_DEX GSE107584.NR3C1.SUP-B15_DEX 396 bp overlap
NR4A2 1 dataset
Motif DE_12h DE_12h-NR4A2_MA0160.3 8 bp overlap
Nkx2-1 1 dataset
Motif DE_12h DE_12h-Nkx2-1_MA1994.2 7 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Nr2F6 1 dataset
Motif DE_12h DE_12h-Nr2F6_MA0728.1 15 bp overlap
Nr2e1 3 datasets
Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap
Motif DE_36h DE_36h-Nr2e1_MA0676.1 9 bp overlap
Motif DE_48h DE_48h-Nr2e1_MA0676.1 9 bp overlap
OLIG1 1 dataset
Motif DE_12h DE_12h-OLIG1_MA0826.1 10 bp overlap
OLIG2 1 dataset
Motif DE_12h DE_12h-OLIG2_MA0678.1 10 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
POU2F1::SOX2 3 datasets
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_24h DE_24h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_36h DE_36h-POU2F1SOX2_MA1962.1 17 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 449 bp overlap
Ppara 1 dataset
Motif DE_12h DE_12h-Ppara_MA2338.1 7 bp overlap
Ptf1A 2 datasets
Motif DE_12h DE_12h-Ptf1A_MA1619.2 8 bp overlap
Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap
RARA 5 datasets
Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap
Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap
Motif DE_12h DE_12h-RARA_MA0730.1 17 bp overlap
Motif DE_24h DE_24h-RARA_MA0729.1 18 bp overlap
Motif DE_36h DE_36h-RARA_MA0729.1 18 bp overlap
RREB1 1 dataset
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
Rarb 4 datasets
Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap
Motif DE_12h DE_12h-Rarb_MA0858.1 17 bp overlap
Motif DE_12h DE_12h-Rarb_MA0858.1 17 bp overlap
Motif DE_36h DE_36h-Rarb_MA0858.1 17 bp overlap
Rarg 5 datasets
Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap
Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap
Motif DE_12h DE_12h-Rarg_MA0860.1 17 bp overlap
Motif DE_24h DE_24h-Rarg_MA0859.2 15 bp overlap
Motif DE_36h DE_36h-Rarg_MA0859.2 15 bp overlap
SCRT1 1 dataset
Motif DE_12h DE_12h-SCRT1_MA0743.3 10 bp overlap
SCRT2 1 dataset
Motif DE_12h DE_12h-SCRT2_MA0744.3 10 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 320 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 290 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 393 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 423 bp overlap
SMARCC1 4 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 422 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 226 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 342 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 293 bp overlap
SOX10 3 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 471 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 360 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 225 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SPIC 1 dataset
Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap
SREBF1 2 datasets
Motif DE_12h DE_12h-SREBF1_MA0595.1 10 bp overlap
Motif DE_36h DE_36h-SREBF1_MA0595.1 10 bp overlap
SREBF2 2 datasets
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
Motif DE_36h DE_36h-SREBF2_MA0596.1 10 bp overlap
Spi1 3 datasets
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Motif DE_36h DE_36h-Spi1_MA0080.7 13 bp overlap
Motif DE_48h DE_48h-Spi1_MA0080.7 13 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
Stat6 1 dataset
Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 314 bp overlap
THRA 1 dataset
Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap
THRB 1 dataset
Motif DE_12h DE_12h-THRB_MA1576.2 18 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 306 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 244 bp overlap
Tbx6 1 dataset
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Tcf21 1 dataset
Motif DE_12h DE_12h-Tcf21_MA0832.2 10 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
ZBTB16 1 dataset
ChIP KG-1_shEZH2 GSE109619.ZBTB16.KG-1_shEZH2 194 bp overlap
ZBTB32 2 datasets
Motif DE_12h DE_12h-ZBTB32_MA1580.1 10 bp overlap
Motif DE_36h DE_36h-ZBTB32_MA1580.1 10 bp overlap
ZBTB6 1 dataset
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
ZFP14 1 dataset
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZIC1 2 datasets
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
Motif DE_36h DE_36h-ZIC1_MA0696.1 14 bp overlap
ZIC4 2 datasets
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
Motif DE_36h DE_36h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
ZNF175 1 dataset
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
ZNF18 5 datasets
ChIP GM12878 GSE97661.ZNF18.GM12878 268 bp overlap
ChIP HEK293 ENCFF066NGR 111 bp overlap
ChIP HEK293 ENCFF066NGR 439 bp overlap
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 416 bp overlap
ChIP HEK293 GSE76494.ZNF18.HEK293 152 bp overlap
ZNF24 1 dataset
Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap
ZNF257 1 dataset
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF263 1 dataset
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF460 3 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif DE_36h DE_36h-ZNF460_MA1596.1 16 bp overlap
ZNF684 2 datasets
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap
Motif DE_36h DE_36h-ZNF684_MA1600.2 14 bp overlap
ZSCAN4 2 datasets
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
Motif DE_36h DE_36h-ZSCAN4_MA1155.1 15 bp overlap
Zfx 1 dataset
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap
Zic2 2 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap