chr4 : 54,093,443 – 54,094,337
894 bp 51 TFs 1 linked gene
This 894 bp open chromatin element is linked to GSX2 and is bound by 51 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
GSX2 5.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:54,088,443 – 54,099,337
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
51 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 144 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 197 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 894 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 401 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 311 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 317 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 770 bp overlap
BRD4 1 dataset
ChIP MCF-10A ERP003925.BRD4.MCF-10A 165 bp overlap
CBX7 2 datasets
ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 492 bp overlap
ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 341 bp overlap
CREBBP 1 dataset
ChIP LS180_125 GSE39277.CREBBP.LS180_125 112 bp overlap
CTBP2 2 datasets
ChIP WA01 ENCSR000EUO.CTBP2.WA01 229 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 477 bp overlap
CTCF 1 dataset
ChIP hiPSC_IIIB12 GSE106870.CTCF.hiPSC_IIIB12 130 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 184 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 108 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 186 bp overlap
ESR1 1 dataset
ChIP T-47D_DMSO GSE148277.ESR1.T-47D_DMSO 73 bp overlap
EZH2 16 datasets
ChIP B cell ENCFF803EMO 234 bp overlap
ChIP B cell ENCFF803EMO 425 bp overlap
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 181 bp overlap
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 199 bp overlap
ChIP DOHH2 ENCFF528GDC 225 bp overlap
ChIP DOHH2 ENCFF528GDC 441 bp overlap
ChIP GM23338 ENCFF613YON 257 bp overlap
ChIP H1 ENCFF232NZA 894 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 412 bp overlap
ChIP astrocyte ENCFF365JTP 105 bp overlap
ChIP astrocyte ENCFF365JTP 342 bp overlap
ChIP fibroblast_DERMAL ENCSR000ASE.EZH2.fibroblast_DERMAL 452 bp overlap
ChIP hepatocyte ENCFF552DZB 319 bp overlap
ChIP hepatocyte ENCFF552DZB 259 bp overlap
ChIP neural progenitor cell ENCFF018MKA 894 bp overlap
ChIP neural progenitor cell ENCFF472NFV 894 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 310 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 114 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 295 bp overlap
ChIP DE DE-GATA4-2 462 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 498 bp overlap
ChIP DE DE-GATA6-2 644 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 642 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 779 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 894 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 228 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 413 bp overlap
GTF2F1 2 datasets
ChIP K-562 ENCSR377BLZ.GTF2F1.K-562 166 bp overlap
ChIP K-562 GSE120104.GTF2F1.K-562 162 bp overlap
INO80 1 dataset
ChIP Hep-G2 GSE107730.INO80.Hep-G2 270 bp overlap
JARID2 6 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 158 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 719 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 448 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 879 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 306 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 229 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 521 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 379 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 894 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 105 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 105 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 666 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 276 bp overlap
MAF 1 dataset
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 271 bp overlap
MAFK 2 datasets
ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 52 bp overlap
ChIP HepG2 ENCFF743ZOF 127 bp overlap
NANOG 4 datasets
ChIP WA01 ERP004238.NANOG.WA01 299 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 200 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 566 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 281 bp overlap
NFKB1 1 dataset
ChIP CD4 GSE116695.NFKB1.CD4 243 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 894 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 687 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 569 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 580 bp overlap
RELA 2 datasets
ChIP CD4_Th1_DMSO GSE62482.RELA.CD4_Th1_DMSO 172 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 169 bp overlap
RNF2 2 datasets
ChIP K-562 ENCSR820GND.RNF2.K-562 360 bp overlap
ChIP K-562 ENCSR820GND.RNF2.K-562 154 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 893 bp overlap
SMAD2 2 datasets
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 585 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 451 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 562 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 569 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 604 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 889 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 469 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 538 bp overlap
SMAD4 1 dataset
ChIP hESC GSE29422.SMAD4.hESC 197 bp overlap
SMARCA4 3 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 186 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 243 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 82 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 321 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 692 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 296 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 277 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 308 bp overlap
SRSF3 1 dataset
ChIP K-562 ENCSR268QIQ.SRSF3.K-562 109 bp overlap
SUZ12 7 datasets
ChIP H1 ENCFF881NFR 894 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 701 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 76 bp overlap
ChIP NT2/D1 ENCFF574SXS 403 bp overlap
ChIP NT2/D1 ENCFF574SXS 602 bp overlap
ChIP ProEs GSE59087.SUZ12.ProEs 140 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 169 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 531 bp overlap
ZNF133 2 datasets
ChIP HEK293 ENCSR283MWQ.ZNF133.HEK293 238 bp overlap
ChIP HEK293T GSE78099.ZNF133.HEK293T 138 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF341 1 dataset
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 90 bp overlap
ZNF417 1 dataset
ChIP HEK293T GSE78099.ZNF417.HEK293T 88 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 389 bp overlap
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