chr4 : 25,890,607 25,891,102
495 bp 58 TFs 2 linked genes
This 495 bp open chromatin element is linked to SMIM20 and SEL1L3 and is bound by 58 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
SMIM20 23.5 kb Distal Multiome
SEL1L3 27.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:25,885,607 – 25,896,102
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
58 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 153 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 365 bp overlap
BCL6 1 dataset
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 205 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 186 bp overlap
CHD7 2 datasets
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 197 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 467 bp overlap
CTCF 63 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 109 bp overlap
ChIP AG04450 ENCFF116DJL 246 bp overlap
ChIP DOHH2 ENCFF637WNW 375 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 437 bp overlap
ChIP GM20000 ENCFF217HWJ 165 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H1 ENCFF764RHO 228 bp overlap
ChIP H9 ENCFF152GTF 123 bp overlap
ChIP H9 ENCFF152GTF 393 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 167 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 195 bp overlap
ChIP HFFc6 ENCFF005CJI 453 bp overlap
ChIP IMR-90_Ctrl GSE125639.CTCF.IMR-90_Ctrl 187 bp overlap
ChIP K-562_RF2-insertion GSE140868.CTCF.K-562_RF2-insertion 102 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 134 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 240 bp overlap
ChIP MCF-7 ENCFF139NQI 238 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 138 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 203 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 425 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 166 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 235 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 147 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 205 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 222 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 166 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 236 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 197 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 236 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 149 bp overlap
ChIP astrocyte of the cerebellum ENCFF511OCS 293 bp overlap
ChIP astrocyte of the spinal cord ENCFF213GKL 261 bp overlap
ChIP astrocyte of the spinal cord ENCFF213GKL 261 bp overlap
ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 177 bp overlap
ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 111 bp overlap
ChIP cardiac muscle cell ENCFF777TNC 289 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 216 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 338 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 289 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 272 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 151 bp overlap
ChIP endodermal cell ENCFF471YCZ 374 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 134 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 155 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 185 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 344 bp overlap
ChIP heart right ventricle ENCFF435TKW 345 bp overlap
ChIP hiPSC GSE115407.CTCF.hiPSC 233 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 140 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 235 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 306 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 268 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 371 bp overlap
ChIP neural progenitor cell ENCFF420RBO 328 bp overlap
ChIP neural progenitor cell ENCFF581WPG 488 bp overlap
ChIP neural progenitor cell ENCFF581WPG 372 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 272 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 165 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 223 bp overlap
ChIP retina_AB1-FW16 GSE86981.CTCF.retina_AB1-FW16 283 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 257 bp overlap
CTCFL 1 dataset
ChIP Kelly_resistant GSE103030.CTCFL.Kelly_resistant 129 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 323 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 435 bp overlap
ChIP H1 ENCFF785DWK 232 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 156 bp overlap
ETV2::FOXI1 2 datasets
Motif DE_12h DE_12h-ETV2FOXI1_MA1942.2 11 bp overlap
Motif ES_0h ES_0h-ETV2FOXI1_MA1942.2 11 bp overlap
ETV5::FOXO1 2 datasets
Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap
Motif ES_0h ES_0h-ETV5FOXO1_MA1947.2 10 bp overlap
EZH2 3 datasets
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 395 bp overlap
ChIP neural progenitor cell ENCFF472NFV 495 bp overlap
ChIP neural progenitor cell ENCFF472NFV 214 bp overlap
Elf5 2 datasets
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
Motif ES_0h ES_0h-Elf5_MA0136.4 8 bp overlap
FLI1 1 dataset
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 213 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 365 bp overlap
FOXO1::ELK1 2 datasets
Motif DE_12h DE_12h-FOXO1ELK1_MA1954.2 13 bp overlap
Motif ES_0h ES_0h-FOXO1ELK1_MA1954.2 13 bp overlap
FOXO1::ELK3 2 datasets
Motif DE_12h DE_12h-FOXO1ELK3_MA1955.2 13 bp overlap
Motif ES_0h ES_0h-FOXO1ELK3_MA1955.2 13 bp overlap
FOXO1::FLI1 2 datasets
Motif DE_12h DE_12h-FOXO1FLI1_MA1956.2 13 bp overlap
Motif ES_0h ES_0h-FOXO1FLI1_MA1956.2 13 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 370 bp overlap
IKZF2 2 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
KDM4A 1 dataset
ChIP H1 ENCFF078LED 172 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 118 bp overlap
MECOM 1 dataset
ChIP SKH1_CEBPA-ER_E2 GSE102697.MECOM.SKH1_CEBPA-ER_E2 184 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 271 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 454 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 381 bp overlap
MYOD1 3 datasets
ChIP RD GSE137168.MYOD1.RD 206 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 315 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 177 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 335 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 212 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 155 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 296 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 253 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 153 bp overlap
NFIC 2 datasets
Motif DE_12h DE_12h-NFIC_MA1527.2 15 bp overlap
Motif ES_0h ES_0h-NFIC_MA1527.2 15 bp overlap
PRDM1 2 datasets
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
Motif ES_0h ES_0h-PRDM1_MA0508.4 7 bp overlap
Pparg::Rxra 2 datasets
Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap
Motif ES_0h ES_0h-PpargRxra_MA0065.3 13 bp overlap
RAD21 1 dataset
ChIP RH4 GSE83726.RAD21.RH4 324 bp overlap
RARB 2 datasets
Motif DE_12h DE_12h-RARB_MA1552.2 13 bp overlap
Motif ES_0h ES_0h-RARB_MA1552.2 13 bp overlap
RARG 2 datasets
Motif DE_12h DE_12h-RARG_MA1553.2 13 bp overlap
Motif ES_0h ES_0h-RARG_MA1553.2 13 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 200 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 266 bp overlap
ChIP neural cell ENCFF882LXX 397 bp overlap
SIN3A 1 dataset
ChIP H1 ENCFF042ZSL 480 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 108 bp overlap
SMARCA4 1 dataset
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 282 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 179 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 283 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 343 bp overlap
SRF 2 datasets
ChIP H1 ENCFF036PEF 225 bp overlap
ChIP WA01 ENCSR000BIV.SRF.WA01 197 bp overlap
Stat2 2 datasets
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
Motif ES_0h ES_0h-Stat2_MA1623.2 10 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 129 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 138 bp overlap
TFAP2A 2 datasets
Motif DE_12h DE_12h-TFAP2A_MA0810.2 11 bp overlap
Motif ES_0h ES_0h-TFAP2A_MA0810.2 11 bp overlap
TFAP2B 2 datasets
Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap
Motif ES_0h ES_0h-TFAP2B_MA0811.2 11 bp overlap
TP53 1 dataset
ChIP WTC11 ENCFF359JCU 412 bp overlap
TRERF1 1 dataset
ChIP WTC11 ENCFF113BUM 245 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 283 bp overlap
ZNF257 1 dataset
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF462 3 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCFF896CCA 238 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 495 bp overlap
ZNF707 2 datasets
Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap
Motif ES_0h ES_0h-ZNF707_MA1715.1 15 bp overlap