chr3 : 174,775,636 174,775,916
280 bp 56 TFs 0 linked genes
This 280 bp open chromatin element has no linked target genes and is bound by 56 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:174,770,636 – 174,780,916
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
56 transcription factors
Source
Cell type
AFF4 2 datasets
ChIP HeLa GSE40632.AFF4.HeLa 221 bp overlap
ChIP HeLa_DOX GSE40632.AFF4.HeLa_DOX 128 bp overlap
AHR 1 dataset
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 171 bp overlap
AR 1 dataset
ChIP fibroblast_prostate-cancer_PCDF2 GSE126852.AR.fibroblast_prostate-cancer_PCDF2 131 bp overlap
BRD4 4 datasets
ChIP CHL-1_OTX015 GSE95585.BRD4.CHL-1_OTX015 280 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 280 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 247 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 280 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 157 bp overlap
CDK8 1 dataset
ChIP SET-2 GSE65138.CDK8.SET-2 225 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 153 bp overlap
CREBBP 2 datasets
ChIP PC-3 GSE147455.CREBBP.PC-3 129 bp overlap
ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 140 bp overlap
CTCF 4 datasets
ChIP RH4 GSE83726.CTCF.RH4 148 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 125 bp overlap
ChIP heart left ventricle ENCFF185CKY 280 bp overlap
ChIP heart_left-ventricle ENCSR544APK.CTCF.heart_left-ventricle 259 bp overlap
CTCFL 1 dataset
ChIP FT282 GSE131931.CTCFL.FT282 218 bp overlap
ELL2 1 dataset
ChIP HeLa GSE40632.ELL2.HeLa 175 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 173 bp overlap
ERG 6 datasets
ChIP aortic-endothelial-cell_D14 GSE139377.ERG.aortic-endothelial-cell_D14 214 bp overlap
ChIP aortic-endothelial-cell_D16 GSE139377.ERG.aortic-endothelial-cell_D16 246 bp overlap
ChIP aortic-endothelial-cell_D33 GSE139377.ERG.aortic-endothelial-cell_D33 182 bp overlap
ChIP aortic-endothelial-cell_D39 GSE139377.ERG.aortic-endothelial-cell_D39 257 bp overlap
ChIP aortic-endothelial-cell_D47 GSE139377.ERG.aortic-endothelial-cell_D47 234 bp overlap
ChIP aortic-endothelial-cell_D51 GSE139377.ERG.aortic-endothelial-cell_D51 280 bp overlap
ESR1 5 datasets
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 148 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 199 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 233 bp overlap
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 95 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 196 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 280 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 280 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_GATA4 GSE90454.FOXA2.BJ1-hTERT_GATA4 145 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 280 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 125 bp overlap
FOXL2 4 datasets
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 280 bp overlap
ChIP HGrC1_C134W-TGF_parental GSE138496.FOXL2.HGrC1_C134W-TGF_parental 87 bp overlap
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 71 bp overlap
ChIP SVOG-3e_DOX-WT GSE126171.FOXL2.SVOG-3e_DOX-WT 280 bp overlap
FOXO1-PAX3 2 datasets
ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 280 bp overlap
ChIP RH4_Entinostat-6H GSE116344.FOXO1-PAX3.RH4_Entinostat-6H 250 bp overlap
GATA1 1 dataset
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 55 bp overlap
GATA2 5 datasets
ChIP ESF GSE108408.GATA2.ESF 208 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 238 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 160 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 280 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 248 bp overlap
GATA4 13 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 195 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 171 bp overlap
ChIP DE DE-GATA4-1 280 bp overlap
ChIP DE DE-GATA4-2 280 bp overlap
ChIP G296S GSE85628.GATA4.G296S 172 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 172 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 234 bp overlap
ChIP cardiomyocyte GSE85628.GATA4.cardiomyocyte 168 bp overlap
ChIP cardiomyocyte_1 GSE85628.GATA4.cardiomyocyte_1 165 bp overlap
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 226 bp overlap
ChIP foregut GSE117136.GATA4.foregut 280 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 280 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 280 bp overlap
GATA6 14 datasets
ChIP AGS GSE51705.GATA6.AGS 203 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 132 bp overlap
ChIP DE DE-GATA6-1 280 bp overlap
ChIP DE DE-GATA6-2 280 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 175 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 254 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 280 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 280 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 262 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 280 bp overlap
ChIP foregut GSE117136.GATA6.foregut 280 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 280 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 280 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 280 bp overlap
HDAC2 2 datasets
ChIP PC-3_GDC-resist GSE147455.HDAC2.PC-3_GDC-resist 63 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 280 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 270 bp overlap
JUN 3 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 209 bp overlap
ChIP HAEC_IL1b_4h GSE89970.JUN.HAEC_IL1b_4h 280 bp overlap
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 280 bp overlap
JUNB 1 dataset
ChIP HAEC GSE89970.JUNB.HAEC 188 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 249 bp overlap
MAFK 1 dataset
ChIP OCI-Ly7 GSE47784.MAFK.OCI-Ly7 203 bp overlap
MED1 3 datasets
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 177 bp overlap
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 280 bp overlap
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 280 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 280 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 251 bp overlap
MYC 1 dataset
ChIP PAVE GSE47152.MYC.PAVE 165 bp overlap
MYOD1 2 datasets
ChIP RH4 GSE83726.MYOD1.RH4 218 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 189 bp overlap
MYOG 3 datasets
ChIP RH4 GSE83726.MYOG.RH4 270 bp overlap
ChIP RH4_DMSO-6H GSE116344.MYOG.RH4_DMSO-6H 230 bp overlap
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 273 bp overlap
NCOA2 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 163 bp overlap
NELFE 1 dataset
ChIP HeLa GSE125534.NELFE.HeLa 135 bp overlap
NR3C1 4 datasets
ChIP HeLa-B2_P65KD_TA_TNFA GSE24518.NR3C1.HeLa-B2_P65KD_TA_TNFA 187 bp overlap
ChIP HeLa-B2_TA GSE24518.NR3C1.HeLa-B2_TA 212 bp overlap
ChIP HeLa-B2_TA_TNFA GSE24518.NR3C1.HeLa-B2_TA_TNFA 206 bp overlap
ChIP IMR-90_GLUCC ERP007081.NR3C1.IMR-90_GLUCC 83 bp overlap
PAX3-FOXO1 2 datasets
ChIP RH3 GSE83726.PAX3-FOXO1.RH3 191 bp overlap
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 261 bp overlap
POLR2A 1 dataset
ChIP stomach ENCFF820WZN 202 bp overlap
POU5F1 1 dataset
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 139 bp overlap
RAD21 1 dataset
ChIP RH4 GSE83726.RAD21.RH4 192 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 160 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 228 bp overlap
RELA 29 datasets
ChIP HAEC GSE89970.RELA.HAEC 161 bp overlap
ChIP HAEC_IL1b_4h GSE89970.RELA.HAEC_IL1b_4h 280 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 250 bp overlap
ChIP HeLa-B2_TNFA GSE24518.RELA.HeLa-B2_TNFA 237 bp overlap
ChIP aortic-endothelial-cell_IL1B_D10 GSE139377.RELA.aortic-endothelial-cell_IL1B_D10 188 bp overlap
ChIP aortic-endothelial-cell_IL1B_D11 GSE139377.RELA.aortic-endothelial-cell_IL1B_D11 268 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 280 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 280 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 273 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 171 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 280 bp overlap
ChIP aortic-endothelial-cell_IL1B_D22 GSE139377.RELA.aortic-endothelial-cell_IL1B_D22 166 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 258 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 280 bp overlap
ChIP aortic-endothelial-cell_IL1B_D28 GSE139377.RELA.aortic-endothelial-cell_IL1B_D28 275 bp overlap
ChIP aortic-endothelial-cell_IL1B_D3 GSE139377.RELA.aortic-endothelial-cell_IL1B_D3 253 bp overlap
ChIP aortic-endothelial-cell_IL1B_D31 GSE139377.RELA.aortic-endothelial-cell_IL1B_D31 208 bp overlap
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 221 bp overlap
ChIP aortic-endothelial-cell_IL1B_D35 GSE139377.RELA.aortic-endothelial-cell_IL1B_D35 241 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 234 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 280 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 280 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 280 bp overlap
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 252 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 280 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 216 bp overlap
ChIP aortic-endothelial-cell_IL1B_D6 GSE139377.RELA.aortic-endothelial-cell_IL1B_D6 262 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 280 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 280 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 211 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 280 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 248 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 180 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 180 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 218 bp overlap
TEAD1 1 dataset
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 205 bp overlap
TEAD4 6 datasets
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 110 bp overlap
ChIP MCF-7_BLRP_WT_E2 GSE125594.TEAD4.MCF-7_BLRP_WT_E2 184 bp overlap
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 250 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 155 bp overlap
ChIP T-47D_E2 GSE125594.TEAD4.T-47D_E2 165 bp overlap
ChIP T-47D_Veh GSE125594.TEAD4.T-47D_Veh 280 bp overlap
YAP1 1 dataset
ChIP hiPSC GSE111930.YAP1.hiPSC 214 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 277 bp overlap