chr3 : 174,442,085 174,442,265
180 bp 45 TFs 1 linked gene
This 180 bp open chromatin element is linked to NAALADL2 and is bound by 45 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
NAALADL2 1.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:174,437,085 – 174,447,265
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
45 transcription factors
Source
Cell type
AR 1 dataset
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 158 bp overlap
ATF2 1 dataset
ChIP K-562 ENCSR869IUD.ATF2.K-562 180 bp overlap
ATF7 1 dataset
ChIP K562 ENCFF308SKS 108 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 143 bp overlap
BAF155 1 dataset
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 107 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 149 bp overlap
BRD4 16 datasets
ChIP 22Rv1_DHT-DMSO GSE118247.BRD4.22Rv1_DHT-DMSO 116 bp overlap
ChIP CHL-1 GSE95585.BRD4.CHL-1 180 bp overlap
ChIP HFOB_DIFF GSE82295.BRD4.HFOB_DIFF 55 bp overlap
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 168 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 129 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 180 bp overlap
ChIP LNCaP-C4-2_F133V_JQ1 GSE88871.BRD4.LNCaP-C4-2_F133V_JQ1 180 bp overlap
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 180 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 110 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 110 bp overlap
ChIP MDA-MB-231_JQ1-neg_L GSE136151.BRD4.MDA-MB-231_JQ1-neg_L 180 bp overlap
ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 137 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 166 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 180 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 180 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 58 bp overlap
BRD7 1 dataset
ChIP SUM159PT_JQ1 GSE131097.BRD7.SUM159PT_JQ1 138 bp overlap
CHD1 1 dataset
ChIP LNCaP GSE64528.CHD1.LNCaP 150 bp overlap
CSNK2A1 1 dataset
ChIP LNCaP_DHT GSE58607.CSNK2A1.LNCaP_DHT 134 bp overlap
EZH2 3 datasets
ChIP HepG2 ENCFF912EIW 106 bp overlap
ChIP HepG2 ENCFF912EIW 180 bp overlap
ChIP neural progenitor cell ENCFF018MKA 180 bp overlap
FOXA1 2 datasets
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 88 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 180 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 60 bp overlap
HOXB13 1 dataset
ChIP G-401 GSE65381.HOXB13.G-401 180 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 126 bp overlap
MAX 1 dataset
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 139 bp overlap
MAZ 1 dataset
ChIP IMR-90 ENCSR000EFF.MAZ.IMR-90 73 bp overlap
MED1 1 dataset
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 118 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 180 bp overlap
NELFCD 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.NELFCD.DLD-1_NELFCD-AID 177 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 158 bp overlap
OVOL1 2 datasets
ChIP MCF-7 ENCFF537GWI 180 bp overlap
ChIP MCF-7 ENCSR829WBA.OVOL1.MCF-7 94 bp overlap
PGR 1 dataset
ChIP AB32 GSE31129.PGR.AB32 180 bp overlap
PHIP 2 datasets
ChIP HCT-116_MLL4-SET-KO_ab834 GSE101646.PHIP.HCT-116_MLL4-SET-KO_ab834 180 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 180 bp overlap
POLR2A 1 dataset
ChIP sigmoid colon ENCFF748YVT 180 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 62 bp overlap
RAD21 2 datasets
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 177 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 180 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 76 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 180 bp overlap
RNF2 2 datasets
ChIP A-549 ENCSR798EGJ.RNF2.A-549 180 bp overlap
ChIP GM12878 ENCSR679FAB.RNF2.GM12878 145 bp overlap
SMARCA2 1 dataset
ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 180 bp overlap
SMARCA4 6 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 113 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 180 bp overlap
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 57 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 180 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 180 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 89 bp overlap
SMC3 1 dataset
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 167 bp overlap
STAG1 1 dataset
ChIP MCF-7_E2_SHCTCF ERP000209.STAG1.MCF-7_E2_SHCTCF 92 bp overlap
SUPT5H 3 datasets
ChIP DLD-1_NELFE-AID GSE144786.SUPT5H.DLD-1_NELFE-AID 180 bp overlap
ChIP DLD-1_NELFE-AID_treated GSE144786.SUPT5H.DLD-1_NELFE-AID_treated 62 bp overlap
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 180 bp overlap
SUPT6H 1 dataset
ChIP HCT-116_Inhibitor GSE130509.SUPT6H.HCT-116_Inhibitor 139 bp overlap
TBX5 2 datasets
ChIP cardiomyocyte GSE85628.TBX5.cardiomyocyte 60 bp overlap
ChIP cardiomyocyte_1 GSE85628.TBX5.cardiomyocyte_1 60 bp overlap
TOP1 1 dataset
ChIP LNCaP_DHT GSE63202.TOP1.LNCaP_DHT 180 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 154 bp overlap
YY1 1 dataset
ChIP HCT-116 ENCSR000BNX.YY1.HCT-116 102 bp overlap
ZNF24 1 dataset
ChIP K562 ENCFF615YYW 60 bp overlap
ZNF384 1 dataset
ChIP HEK293T ENCFF019DZX 69 bp overlap