chr3 : 147,513,712 – 147,514,305
593 bp 73 TFs 0 linked genes
This 593 bp open chromatin element has no linked target genes and is bound by 73 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:147,508,712 – 147,519,305
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
73 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 194 bp overlap
CDX2 1 dataset
ChIP LS180 GSE31939.CDX2.LS180 196 bp overlap
CEBPB 1 dataset
ChIP WA01 ENCSR000EBV.CEBPB.WA01 121 bp overlap
CHD2 1 dataset
ChIP WA01 ENCSR000EBT.CHD2.WA01 164 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 224 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 308 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 403 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 476 bp overlap
CTCF 4 datasets
ChIP H9 ENCFF152GTF 461 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 357 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 348 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 500 bp overlap
CTCFL 1 dataset
ChIP Kelly_shLUC-res GSE115248.CTCFL.Kelly_shLUC-res 180 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 251 bp overlap
Crx 5 datasets
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
Motif DE_36h DE_36h-Crx_MA0467.3 6 bp overlap
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
E2F1 4 datasets
Motif DE_12h DE_12h-E2F1_MA0024.3 12 bp overlap
Motif DE_36h DE_36h-E2F1_MA0024.3 12 bp overlap
Motif DE_48h DE_48h-E2F1_MA0024.3 12 bp overlap
Motif DE_60h DE_60h-E2F1_MA0024.3 12 bp overlap
E2F4 4 datasets
Motif DE_12h DE_12h-E2F4_MA0470.3 13 bp overlap
Motif DE_36h DE_36h-E2F4_MA0470.3 13 bp overlap
Motif DE_48h DE_48h-E2F4_MA0470.3 13 bp overlap
Motif DE_60h DE_60h-E2F4_MA0470.3 13 bp overlap
E2F6 2 datasets
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 245 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 260 bp overlap
ESR1 1 dataset
ChIP MCF-7_LTED GSE86538.ESR1.MCF-7_LTED 179 bp overlap
ETV2::HOXB13 2 datasets
Motif DE_12h DE_12h-ETV2HOXB13_MA1943.2 13 bp overlap
Motif DE_48h DE_48h-ETV2HOXB13_MA1943.2 13 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 593 bp overlap
FOXA1 1 dataset
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 125 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 509 bp overlap
ChIP DE DE-FOXA2-2 440 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 257 bp overlap
Foxl2 1 dataset
Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 459 bp overlap
ChIP DE DE-GATA4-2 515 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 432 bp overlap
ChIP DE DE-GATA6-2 535 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 295 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 436 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 510 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 446 bp overlap
ChIP foregut GSE117136.GATA6.foregut 308 bp overlap
GSC 5 datasets
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
Motif DE_36h DE_36h-GSC_MA0648.2 6 bp overlap
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
GSC2 5 datasets
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
Motif DE_36h DE_36h-GSC2_MA0891.2 6 bp overlap
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000BNR.HDAC2.WA01 148 bp overlap
INSM1 3 datasets
Motif DE_12h DE_12h-INSM1_MA0155.1 12 bp overlap
Motif DE_48h DE_48h-INSM1_MA0155.1 12 bp overlap
Motif DE_60h DE_60h-INSM1_MA0155.1 12 bp overlap
JUN 1 dataset
ChIP WA01 ENCSR000ECA.JUN.WA01 174 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000EBZ.JUND.WA01 129 bp overlap
Lhx3 2 datasets
Motif DE_48h DE_48h-Lhx3_MA0135.2 12 bp overlap
Motif DE_60h DE_60h-Lhx3_MA0135.2 12 bp overlap
MAFK 1 dataset
ChIP WA01 ENCSR000EBS.MAFK.WA01 152 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 162 bp overlap
MEF2C 1 dataset
Motif DE_12h DE_12h-MEF2C_MA0497.2 11 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 328 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 475 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 405 bp overlap
MEIS1 7 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MYB 2 datasets
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
Motif DE_48h DE_48h-MYB_MA0100.4 6 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 475 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 391 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 362 bp overlap
ChIP hESC GSE18292.NANOG.hESC 101 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 155 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 331 bp overlap
Nr2e3 4 datasets
Motif DE_12h DE_12h-Nr2e3_MA0164.2 6 bp overlap
Motif DE_36h DE_36h-Nr2e3_MA0164.2 6 bp overlap
Motif DE_48h DE_48h-Nr2e3_MA0164.2 6 bp overlap
Motif DE_60h DE_60h-Nr2e3_MA0164.2 6 bp overlap
OTX1 5 datasets
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
Motif DE_36h DE_36h-OTX1_MA0711.2 6 bp overlap
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
OTX2 7 datasets
Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap
Motif DE_36h DE_36h-OTX2_MA0712.3 7 bp overlap
Motif DE_48h DE_48h-OTX2_MA0712.3 7 bp overlap
Motif DE_60h DE_60h-OTX2_MA0712.3 7 bp overlap
Motif DE_72h DE_72h-OTX2_MA0712.3 7 bp overlap
ChIP WTC11 ENCFF634NAO 245 bp overlap
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 382 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 195 bp overlap
PITX1 5 datasets
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
Motif DE_36h DE_36h-PITX1_MA0682.3 6 bp overlap
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
PITX2 5 datasets
Motif DE_12h DE_12h-PITX2_MA1547.2 8 bp overlap
Motif DE_36h DE_36h-PITX2_MA1547.2 8 bp overlap
Motif DE_48h DE_48h-PITX2_MA1547.2 8 bp overlap
Motif DE_60h DE_60h-PITX2_MA1547.2 8 bp overlap
Motif DE_72h DE_72h-PITX2_MA1547.2 8 bp overlap
PITX3 5 datasets
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
Motif DE_36h DE_36h-PITX3_MA0714.2 6 bp overlap
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
POU5F1 3 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 499 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 330 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 288 bp overlap
RBPJ 4 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
Motif DE_36h DE_36h-RBPJ_MA1116.2 6 bp overlap
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
RHOXF1 5 datasets
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_36h DE_36h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 384 bp overlap
Rhox11 1 dataset
Motif DE_12h DE_12h-Rhox11_MA0629.2 9 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 139 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 369 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 184 bp overlap
SMARCC1 1 dataset
ChIP hiPSC GSE124903.SMARCC1.hiPSC 253 bp overlap
SOX10 4 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 240 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 97 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 203 bp overlap
SPIC 4 datasets
Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap
Motif DE_36h DE_36h-SPIC_MA0687.2 13 bp overlap
Motif DE_48h DE_48h-SPIC_MA0687.2 13 bp overlap
Motif DE_60h DE_60h-SPIC_MA0687.2 13 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 123 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 123 bp overlap
STAT3 4 datasets
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
Motif DE_36h DE_36h-STAT3_MA0144.3 9 bp overlap
Motif DE_48h DE_48h-STAT3_MA0144.3 9 bp overlap
Motif DE_60h DE_60h-STAT3_MA0144.3 9 bp overlap
Sox6 4 datasets
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Motif DE_36h DE_36h-Sox6_MA0515.1 10 bp overlap
Motif DE_48h DE_48h-Sox6_MA0515.1 10 bp overlap
Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap
Stat2 2 datasets
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
Motif DE_48h DE_48h-Stat2_MA1623.2 10 bp overlap
TBP 1 dataset
ChIP WA01 ENCSR000ECB.TBP.WA01 143 bp overlap
TFDP1 1 dataset
Motif DE_12h DE_12h-TFDP1_MA1122.2 8 bp overlap
YY1 3 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 228 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 230 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 149 bp overlap
ZNF547 3 datasets
Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap
Motif DE_48h DE_48h-ZNF547_MA2334.1 13 bp overlap
Motif DE_60h DE_60h-ZNF547_MA2334.1 13 bp overlap
ZNF574 4 datasets
Motif DE_12h DE_12h-ZNF574_MA1982.2 14 bp overlap
Motif DE_36h DE_36h-ZNF574_MA1982.2 14 bp overlap
Motif DE_48h DE_48h-ZNF574_MA1982.2 14 bp overlap
Motif DE_60h DE_60h-ZNF574_MA1982.2 14 bp overlap
ZNF677 1 dataset
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
Zic1::Zic2 5 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_36h DE_36h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_48h DE_48h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_60h DE_60h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_72h DE_72h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 5 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Motif DE_48h DE_48h-Zic2_MA1629.2 9 bp overlap
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap
Motif DE_72h DE_72h-Zic2_MA1629.2 9 bp overlap
Zic3 5 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap
Motif DE_48h DE_48h-Zic3_MA0697.3 7 bp overlap
Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap
Motif DE_72h DE_72h-Zic3_MA0697.3 7 bp overlap
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